Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly2
    • Biological sequences2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Community analysis1
    • Disease1
    • Environmental microbiology1
    • Epidemiology1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Pathology1
    • Public health1
    • Public health and epidemiology1
    • Shotgun metagenomics1
    • Taxonomy1
    • Show N_FILTERS more
    • Tool
    • NanoPlot
    • Galaxy31
    • SAMtools12
    • BWA9
    • fastp9
    • Falco8
    • MultiQC8
    • BCFtools7
    • FastQC7
    • Trimmomatic5
    • seqtk4
    • BEDTools3
    • BamTools3
    • Cutadapt3
    • FreeBayes3
    • GEMINI3
    • MAFFT3
    • QualiMap3
    • ggplot23
    • kraken23
    • BLAST2
    • Bandage2
    • COMBAT-TB Workbench2
    • DeepTools2
    • RSeQC2
    • SRA Software Toolkit2
    • STAR2
    • Stacks2
    • Trim Galore2
    • compute_sequence_length2
    • iVar2
    • pyGenomeTracks2
    • snippy2
    • tb-profiler2
    • ABRicate1
    • Bowtie 21
    • Bracken1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • EGA1
    • FASTQE1
    • FASTX-Toolkit1
    • FREEC1
    • FastTree1
    • FeatureCounts1
    • Flye1
    • GOseq1
    • Galactic Circos1
    • IDR1
    • IsoformSwitchAnalyzeR1
    • JBrowse1
    • Jvarkit1
    • KrakenTools1
    • MACS1
    • MEME1
    • MLST1
    • MSstats1
    • MaxQuant1
    • Medaka1
    • MethylDackel1
    • Minimap21
    • NCBI Resources1
    • Newick Utilities1
    • Nextclade1
    • PfamScan1
    • QUAST1
    • R1
    • RAxML1
    • Recentrifuge1
    • SeqCode1
    • StringTie1
    • UCSC Genome Browser Utilities1
    • Unicycler1
    • VAPOR1
    • VarScan1
    • Vcflib1
    • gffcompare1
    • gffread1
    • iqtree1
    • lofreq1
    • pangolin1
    • pathview1
    • pycoQC1
    • rnaQUAST1
    • shovill1
    • snpEff1
    • taxonomy_krona_chart1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Assembly1
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • biodiversity1
    • covid191
    • cyoa1
    • microgalaxy1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner2
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Alexandre Cormier1
    • Anthony Bretaudeau1
    • Cameron Hyde1
    • Engy Nasr1
    • Erwan Corre1
    • Laura Leroi1
    • Maria Doyle1
    • Paul Zierep1
    • Stéphanie Robin1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Bérénice Batut7
    • Helena Rasche7
    • Saskia Hiltemann7
    • Björn Grüning6
    • Cristóbal Gallardo5
    • Anthony Bretaudeau3
    • Deepti Varshney3
    • Anna Syme2
    • Teresa Müller2
    • Alexandre Cormier1
    • Anika Erxleben1
    • Anne Fouilloux1
    • Anup Kumar1
    • Bazante Sanders1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Maria Doyle1
    • Mateo Boudet1
    • Matthias Bernt1
    • Matúš Kalaš1
    • Miaomiao Zhou1
    • Natalie Kucher1
    • Nicola Soranzo1
    • Paul Zierep1
    • Simon Bray1
    • Simon Gladman1
    • Swathi Nataraj1
    • Willem de Koning1
    • William Durand1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Tools: NanoPlot

and Contributors: Wolfgang Maier

and Resource type: e-learning

3 e-learning materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• intermediate
    Sequence assembly Assembly biodiversity covid19
  • e-learning

    Quality Control

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.