Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Sequence databases
    • DNA variation7
    • Genetic variation7
    • Genomic variation7
    • Mutation7
    • Polymorphism7
    • Somatic mutations7
    • Assembly3
    • Sequence assembly3
    • Antimicrobial stewardship2
    • Biological sequences2
    • Communicable disease2
    • Epidemiology2
    • Exomes2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Infectious disease2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Public health2
    • Public health and epidemiology2
    • Sequence analysis2
    • Synthetic genomics2
    • Transmissible disease2
    • Viral genomics2
    • Whole genomes2
    • Community analysis1
    • Comparative transcriptomics1
    • DNA polymorphism1
    • Disease1
    • Environmental microbiology1
    • Evolution1
    • Evolutionary biology1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Microsatellites1
    • Molecular community analysis1
    • Pathology1
    • RFLP1
    • SNP1
    • Shotgun metagenomics1
    • Single nucleotide polymorphism1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • SAMtools
    • Galaxy5
    • FastQC2
    • NanoPlot2
    • fastp2
    • kraken22
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BLAST1
    • BWA1
    • BamTools1
    • Bandage1
    • Bracken1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Cutadapt1
    • FASTQE1
    • Falco1
    • FastTree1
    • Flye1
    • KrakenTools1
    • MAFFT1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • Newick Utilities1
    • Recentrifuge1
    • Trimmomatic1
    • compute_sequence_length1
    • ggplot21
    • pycoQC1
    • seqtk1
    • taxonomy_krona_chart1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training2
    • Show N_FILTERS more
    • Keyword
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • covid191
    • cyoa1
    • microgalaxy1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner1
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students2
    • Show N_FILTERS more
    • Author
    • Bérénice Batut1
    • Engy Nasr1
    • Paul Zierep1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Bérénice Batut4
    • Saskia Hiltemann4
    • Björn Grüning3
    • Helena Rasche3
    • Anthony Bretaudeau2
    • Cristóbal Gallardo2
    • Niall Beard2
    • Nicola Soranzo2
    • William Durand2
    • Anup Kumar1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Maria Doyle1
    • Mehmet Tekman1
    • Paul Zierep1
    • Teresa Müller1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows2
    • Associated Training Datasets1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Sequence databases

and Tools: SAMtools

and Contributors: Wolfgang Maier

2 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• intermediate
    Sequence analysis covid19
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.