Materials - TeSS Sandbox (Training eSupport System)

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- Mathematical modelling6
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- Galaxy53
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- BEDTools2
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- COMBAT-TB Workbench2
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- DISEASES2
- Data Stewardship Wizard2
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- Galactic Circos2
- HISAT22
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- MSstats2
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- QualiMap2
- The Protein Data Bank (PDB)2
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- ggplot22
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- AutoDock Vina1
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- Bwa-mem21
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- FeatureCounts1
- FlashLFQ1
- Flye1
- Fpocket1
- FreeBayes1
- GAEVAL1
- GOseq1
- Galaxy Image Analysis1
- GenomeScope 2.01
- Gromacs1
- Helixer1
- InterMine1
- InterMineR1
- InterProScan (EBI)1
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- MALDIquant1
- MDAnalysis1
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- Matchms1
- Minimap21
- NanoPlot1
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- ORGANISMS1
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- STRING: functional protein association networks1
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- Galaxy Training79
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- Finn's Test Provider11
- PerMedCoE10
- CINECA PROJECT5
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- Bioinformatics and Biomathematics Training Hub2
- DTLS - Dutch Techcentre For Life Sciences2
- IFB French Institute of Bioinformatics2
- Novo Nordisk Foundation Center for Protein Research2
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- Keyword
- Foundations of Data Science17
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- training10
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- covid195
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- data visualisation4
- programming4
- torsten schwede & thierry sengstag group4
- RNA-Seq3
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- Biological databases3
- DIA3
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- R3
- RNA3
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- Variant Analysis3
- Visualisation3
- cell-level simulations3
- data stewardship3
- pacbio3
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- proteogenomics3
- workflows3
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- Python2
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- Standards2
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- Transcriptomics2
- VGP2
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- assembly2
- authorisation2
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- bernd rinn group2
- biostatistics,experimental biology,functional genomics,genes and genomes,training2
- biostatistics,experimental biology,functional genomics,genes and genomes,training,mauro delorenzi & frédéric schütz group2
- biostatistics,experimental biology,functional genomics,genes and genomes,training,raphael gottardo group2
- cell simulations2
- collections2
- cyoa2
- data management plan2
- data mining2
- enanomapper2
- federated data analysis2
- game2
- genomics2
- interactive-tools2
- kubernetes2
- machine learning2
- mark ibberson group2
- mauro delorenzi & frédéric schütz group2
- metadata2
- programming,data analysis,training,data visualisation,torsten schwede & thierry sengstag group,mark ibberson group2
- programming,training,torsten schwede & thierry sengstag group,mark ibberson group2
- reproducibility2
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- Annotation1
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- Intermediate
- Not specified1066
- Beginner707
- Advanced33
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- Licence
- Creative Commons Attribution 4.0 International102
- License Not Specified57
- Creative Commons Attribution Non Commercial Share Alike 4.0 International6
- Creative Commons Attribution Share Alike 4.0 International3
- GNU General Public License v3.0 only3
- Other (Non-Commercial)3
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International2
- Academic Free License v3.01
- Apache License 2.01
- BSD 3-Clause "New" or "Revised" License1
- Creative Commons Zero v1.0 Universal1
- GNU General Public License v2.0 only1
- MIT License1
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- Target audience
- Students77
- Academia/ Research Institution14
- Industry14
- Non-Profit Organisation14
- Healthcare11
- Researchers8
- software developers, bioinformaticians6
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities5
- Bioinformaticians5
- health professionals4
- PhD students4
- bioinformaticians4
- data stewards4
- rare disease patients representatives3
- Health Care Professionals3
- Life scientists with programming skills3
- Patient Advocates 3
- data managers3
- healthcare professionals3
- Biologists2
- Biomedical Researchers2
- Computational biologists2
- Data Managers2
- Data Scientists2
- Galaxy Administrators2
- General Physicians2
- Life Science Researchers2
- Post Docs2
- Research Scientists2
- medical students2
- modelers2
- postdoctoral researchers2
- service administrators in organizations that want to make use of ELIXIR AAI 2
- Research Assistants and Research Associates1
- All postgraduates1
- Developers wanting to distribute their MPI dependent software1
- Graduate students1
- HPC system maintainers wanting to enable MPI containers1
- Life scientists1
- Master students1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- PhD1
- Primary care doctors1
- Software developers1
- Support Staff1
- Training providers1
- Undergraduate students1
- Users wanting to construct MPI containers1
- biologists1
- computational scientists1
- data entering1
- data librarians1
- experimeintal biologist researchers1
- physisians1
- plant researchers1
- post-docs1
- programmers1
- project manager1
- scientific researchers, public health professionals and clinicians 1
- software engineers1
- statisticians1
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- Author
- SIB Swiss Institute of Bioinformatics22
- Helena Rasche21
- The Gulbenkian Training Programme in Bioinformatics14
- The Carpentries10
- Wandrille Duchemin10
- Anthony Bretaudeau9
- Simon Bray7
- Pratik Jagtap6
- Subina Mehta6
- Timothy J. Griffin6
- Melanie Föll5
- Praveen Kumar5
- Saskia Hiltemann5
- Anton Nekrutenko4
- Avans Hogeschool4
- Bazante Sanders4
- Fotis E. Psomopoulos4
- Geert van Geest4
- Matthias Fahrner4
- Mikael Linden4
- Robin Engler4
- Wolfgang Maier4
- Christopher Barnett3
- Cristóbal Gallardo3
- Delphine Lariviere3
- Dominik Frantisek Bucik3
- Donny Vrins3
- Emma Leith3
- James Johnson3
- Marie Crane3
- Michal Prochazka3
- Ray Sajulga3
- Simon Andrews3
- Stéphanie Robin3
- Ahmed Mahfouz2
- Alex Mahmoud2
- Alex Ostrovsky2
- Alexandre Cormier2
- Anna Schaar2
- Baker Matthew2
- Bartosz Bartmanski2
- Björn Grüning2
- Brandon Pickett2
- Bräunlich Gerhard2
- Bérénice Batut2
- Daniel Blankenberg2
- Egon Willighagen2
- Enis Afgan2
- Erwan Corre2
- Flavio Lombardo2
- Florian Christoph Sigloch2
- Francesca Drummer2
- George Gavrillidis2
- Gildas Le Corguillé2
- Gustavo Ruiz Buendia2
- Helena Crowell2
- Hennig John2
- Henrik Nortamo2
- Isabelle Dupanloup2
- Jack Kuipers2
- Jack Kuipers and Wandrille Duchemin2
- Jana Broncova2
- Janick Mathys2
- Jayadev Joshi2
- Jesse Harrison2
- Joao Lourenço2
- John Davis2
- Jonathan Karr2
- Lars Borm2
- Lars Juhl Jensen2
- Laura Leroi2
- Linelle Abueg2
- Marco Varrone2
- Maria Christina Maniou2
- Marius van den Beek2
- Mark Robinson2
- Markus Muller and Thuong Van Du Tran2
- Marta Lloret Llinares2
- Miroslav Kratochvil2
- Morris Riedel2
- Nadia Goué2
- Naveed Ishaque2
- Nuwan Goonasekera2
- Pablo Moreno2
- Personalized Health Informatics Group2
- Rachel Jeitziner Marcone2
- Rasool Saghaleyni2
- Schmid Emanuel2
- Simon Gladman2
- Simone Tiberi2
- Simone Tiberi and Daniele Silvestro2
- Tania Wyss Lozano2
- Tania Wyss Lozano and Gustavo Ruiz Buendia2
- Tharindu Senapathi2
- Thomas Junier2
- Timothy Vaughan2
- Uwe Schmitt2
- Vermeul Swen2
- Yvan Saeys2
- Zoltan Kutalik2
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- Contributor
- Saskia Hiltemann72
- Helena Rasche67
- Björn Grüning55
- Anthony Bretaudeau23
- Bérénice Batut21
- Melanie Föll16
- Marius van den Beek13
- Simon Bray12
- Cristóbal Gallardo11
- Peter van Heusden11
- Subina Mehta11
- Donny Vrins9
- Nicola Soranzo7
- Beatriz Serrano-Solano6
- Wolfgang Maier6
- Anton Nekrutenko5
- Bazante Sanders5
- Christopher Barnett5
- Gildas Le Corguillé5
- Lieven Clement5
- Stéphanie Robin5
- Wendi Bacon5
- Linelle Abueg4
- Martin Čech4
- Niall Beard4
- Daniel Faria3
- Daniel Neves3
- Daniel Sobral3
- Mallory Freeberg3
- Mélanie Petera3
- Romane LIBOUBAN3
- Teresa Müller3
- William Durand3
- Alexandre Cormier2
- Anna Syme2
- Clemens Blank2
- Delphine Lariviere2
- Enis Afgan2
- Erik Garrison2
- Florian Christoph Sigloch2
- Harald Barsnes2
- Hélène Chiapello2
- Jasper Ouwerkerk2
- Jayadev Joshi2
- Jeroen Gilis2
- Lennart Martens2
- Lounès Chikhi2
- Lucille Delisle2
- Maria Christina Maniou2
- Mark Beaumont2
- Mikko Rautiainen2
- Nate Coraor2
- Sabine Österle2
- Vasundra Touré2
- Vitor Sousa2
- Aitor Apaolaza 1
- Adam Taranto1
- Alexander Botzki1
- Allegra Via1
- Alvaro Gonzalez1
- Anup Kumar1
- Armando Arredondo1
- Armando Arredondo Soto1
- Aurélien F. A. Moumbock1
- Aysam Guerler1
- Bert Droesbeke1
- Bilal Shaikh1
- Carina Silva1
- Catherine Bromhead1
- Charlotte Soneson1
- Chris Child1
- Christoph Stritt1
- Daan van Vugt1
- Daniel Blankenberg1
- Dave Clements1
- David Bouyssié1
- David Castillo1
- David López1
- David Philip Judge1
- Deepti Varshney1
- Erwan Corre1
- Fabio Cumbo1
- Felicitas Kindel1
- Finn Bacall1
- Florian Heyl1
- François Serra1
- Galo A. Goig1
- Ion Moraru1
- Jacques van Helden1
- James Johnson1
- Janick Mathys1
- John "Scooter" Morris1
- John Chilton1
- Jonathan Kreplak1
- Jordan Eizenga1
- José Manuel Domínguez1
- Kenneth Hoste1
- Koen Van den Berge1
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- e-learning87
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- slides4
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- FREE online course1
- Mock data1
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- test?1
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- Related resource
- Associated Training Datasets50
- Associated Workflows44
- Jupyter Notebook (with Solutions)13
- Jupyter Notebook (without Solutions)13
- Quarto/RMarkdown Notebook7
- kubernetes2
- ARROWSMITH1
- DMPonline1
- Data Stewardship Wizard1
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- TeSS GitHub1
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- Testing 1231
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Difficulty level: Intermediate

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