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• • Scientific topic
  • Data management64
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  • FAIR data39
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  • Biological sequences30
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  • Comparative transcriptomics24
  • Transcriptome24
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  • Bayesian methods23
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  • Assembly18
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  • Applied ontology10
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  • Cloud computing9
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• • Operation
  • Data handling44
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  • Data extraction11
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  • Data visualisation2
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  • Alignment1
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  • Data editing1
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  • Genome variant detection1
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  • Image analysis1
  • Mathematical modelling1
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  • Mutation detection1
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  • Somatic variant calling1
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• • Tool
  • Galaxy223
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  • BEDTools14
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  • SCANPY12
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  • taxonomy_krona_chart9
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  • kraken27
  • Bandage6
  • FreeBayes6
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  • Trimmomatic6
  • Bowtie 25
  • FASTX-Toolkit5
  • MetaPhlAn5
  • BamTools4
  • Chipster4
  • Diamond4
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  • HUMAnN24
  • KrakenTools4
  • MACS4
  • MaxQuant4
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
  • RStudio4
  • Workflow4Metabolomics4
  • ggplot24
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  • BCFtools3
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  • CellProfiler3
  • Clustal 1.8 (Clustal W, Clustal X)3
  • DropletUtils3
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  • GraPhlAn3
  • HISAT23
  • MSstats3
  • Minimap23
  • Newick Utilities3
  • RSeQC3
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  • SortMeRNA3
  • Stacks3
  • annotatemyids3
  • bx-python3
  • export2graphlan3
  • humann3
  • seqtk3
  • xcms3
  • Bakta2
  • BridgeDbR2
  • Bwa-mem22
  • Cardinal2
  • ChIPpeakAnno2
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  • GOEnrichment2
  • GOseq2
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  • R2
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  • clusterProfiler2
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• • Standard database or policy
  • Minimum Information about Plant Phenotyping Experiment2
  • OBO Foundry2
  • Wheat Data Interoperability Guidelines 1
  • Bioschemas1
  • Chemical Entities of Biological Interest1
  • Common Workflow Language1
  • Crop Ontology1
  • Ensembl1
  • IUPAC International Chemical Identifier1
  • Identifiers.org Registry1
  • MDL molfile Format1
  • Multi-Crop Passport Descriptors1
  • Plant Phenotype Experiment Ontology1
  • STRING: functional protein association networks1
  • Schema.org1
  • Search Tool for Interactions of Chemicals1
  • Simplified Molecular Input Line Entry Specification Format1
  • The Human Metabolome Database1
  • Wheat Trait Ontology1
  • Wikidata1
  • data.eNanoMapper.net1
  • eNanoMapper Ontology1
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• • Content provider
  • Galaxy Training444
  • Swiss Institute of Bioinformatics44
  • Finn's Test Provider34
  • DTLS - Dutch Techcentre For Life Sciences31
  • Bioinformatics and Biomathematics Training Hub23
  • CINECA PROJECT9
  • ELIXIR Brazil9
  • IFB French Institute of Bioinformatics8
  • Centre for Digital Life Norway7
  • CSC - IT Center for Science5
  • Department of Bioinformatics - BiGCaT, Maastricht University5
  • ELIXIR Luxembourg5
  • ELIXIR Portugal5
  • ELIXIR-SI eLearning Platform (EeLP)5
  • EMBL-ABR4
  • NanoCommons4
  • University of Cambridge Bioinformatics Training4
  • Barcelona Supercomputing Center (BSC)3
  • European Bioinformatics Institute (EBI)3
  • COG-Train2
  • InterMine2
  • VIB Bioinformatics Core2
  • ELIXIR Norway1
  • ELIXIR Slovenia1
  • Novo Nordisk Foundation Center for Protein Research1
  • Test Provider1
  • de.NBI1
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• • Keyword
  • Galaxy Server administration52
  • training45
  • Single Cell34
  • data management34
  • Foundations of Data Science31
  • microgalaxy30
  • jupyter-notebook29
  • Transcriptomics25
  • Development in Galaxy24
  • Contributing to the Galaxy Training Material23
  • Ecology22
  • FAIR Data, Workflows, and Research19
  • FAIR data19
  • Statistics and machine learning19
  • ansible19
  • Microbiome18
  • git-gat18
  • FAIR17
  • Using Galaxy and Managing your Data17
  • Proteomics16
  • Teaching and Hosting Galaxy training16
  • genes and genomes16
  • interactive-tools16
  • 10x15
  • Genome Annotation15
  • fair15
  • Assembly14
  • Climate14
  • Introduction to Galaxy Analyses14
  • reproducibility14
  • Data management planning13
  • Data analysis13
  • Epigenetics13
  • data stewardship13
  • earth-system13
  • Roslin Institute12
  • paper-replication12
  • Data management plan11
  • MIGHTS11
  • Variant Analysis11
  • next generation sequencing10
  • prokaryote10
  • Sequence analysis9
  • data visualisation9
  • plants9
  • programming9
  • transcriptomics9
  • EBV workflow8
  • Imaging8
  • Metabolomics8
  • cyoa8
  • gmod8
  • medicine and health8
  • ocean8
  • services and resources8
  • Babraham Institute7
  • DDA7
  • EBV dataset7
  • Evolution7
  • Metadata7
  • Ontologies7
  • dmp7
  • jbrowse17
  • workflows7
  • EeLP6
  • Workflows6
  • alan bridge group6
  • assembly6
  • basic research6
  • bioinformatics6
  • database curation6
  • eLearning6
  • experimental biology6
  • marc robinson-rechavi group6
  • mark ibberson group6
  • metagenomics6
  • nanopore6
  • proteins and proteomes6
  • ro-crate6
  • 16S5
  • Clinical data5
  • DMP5
  • Data management planning5
  • ELIXIR-CONVERGE5
  • Standards5
  • biostatistics5
  • covid195
  • data management plan5
  • data sharing5
  • high-performance computing5
  • illumina5
  • jobs5
  • label-TMT115
  • machine learning5
  • metabarcoding5
  • Data collection4
  • Data preserving4
  • Data sharing4
  • Bioinformatics4
  • Data preserving4
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• • Difficulty level
  • Beginner
  • Not specified1065
  • Intermediate181
  • Advanced33
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• • Licence
  • Creative Commons Attribution 4.0 International500
  • License Not Specified101
  • Creative Commons Attribution Share Alike 4.0 International28
  • Creative Commons Attribution Non Commercial Share Alike 4.0 International12
  • Other (Not Open)12
  • Creative Commons Attribution Non Commercial No Derivatives 4.0 International8
  • Other (Non-Commercial)7
  • Apache License 2.04
  • Creative Commons Attribution Non Commercial 4.0 International4
  • Creative Commons Zero v1.0 Universal4
  • Other (Open)4
  • MIT License3
  • Creative Commons Attribution No Derivatives 4.0 International1
  • GNU General Public License v2.0 only1
  • GNU General Public License v3.0 only1
  • Other (Attribution)1
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• • Target audience
  • Students325
  • Galaxy Administrators76
  • Instructors43
  • PhD candidate27
  • Researchers24
  • Biologists21
  • PhD students16
  • Life Science Researchers15
  • bioinformaticians13
  • PhD candidates9
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  • Master students7
  • Biomedical Researchers5
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  • Data Managers5
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  • Trainers5
  • All postgraduates4
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  • Post Docs4
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  • Training instructors4
  • biologists4
  • data stewards4
  • Academia/ Research Institution3
  • Healthcare3
  • Industry3
  • Non-Profit Organisation3
  • Patient Advocates 3
  • data steward / data manager3
  • life scientists3
  • software developers, bioinformaticians3
  • rare disease patients representatives2
  • Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
  • Bench biologists2
  • Biologists, Genomicists, Computer Scientists2
  • Laboratory technicians2
  • PhD2
  • Scientists2
  • Staff2
  • Undergraduate students2
  • Veterinarians2
  • computational scientists2
  • data manager2
  • policy officer2
  • post-docs2
  • project manager2
  • Anyone1
  • Beginners1
  • Biochemists1
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  • Biophysicists1
  • Computational biologists1
  • Computer Vision scientists1
  • Curators1
  • Developers1
  • General Interest1
  • Graduate students1
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  • PhD students, computer scientists, bioinformaticians and developers who need to maintain/extend existing tools or develop new tools for Galaxy. 1
  • Policy makers1
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  • Python for Biologists1
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  • Senior Managers1
  • Senior Researchers, Lab Managers, Postdocs and PhD Students with basic knowledge of DMPs. Participants in the "Introduction to Data Management Plans" workshop.1
  • Senior scientist/ Principal investigator1
  • Software providers1
  • System administrators1
  • Technicians1
  • beginner1
  • beginner bioinformaticians1
  • biocurators1
  • data managers1
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  • esearchers and research software engineers who would like to begin automating their analyses in workflows. 1
  • experimental nanoscientists1
  • geneticists1
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• • Author
  • Helena Rasche83
  • Bérénice Batut75
  • SIB Swiss Institute of Bioinformatics68
  • Saskia Hiltemann45
  • Björn Grüning31
  • Anton Nekrutenko22
  • Nicola Soranzo20
  • Wendi Bacon19
  • Yvan Le Bras19
  • Katarzyna Kamieniecka18
  • Nate Coraor18
  • Simon Gladman18
  • Krzysztof Poterlowicz17
  • Marie Josse17
  • Fotis E. Psomopoulos16
  • Anthony Bretaudeau15
  • Anne Fouilloux14
  • Bazante Sanders14
  • Mehmet Tekman14
  • Julia Jakiela13
  • Maria Doyle13
  • The Carpentries13
  • Dave Clements10
  • Donny Vrins10
  • Mijke Jetten10
  • Subina Mehta10
  • Anup Kumar9
  • Khaled Jum'ah9
  • Lucille Delisle9
  • Paul Zierep9
  • Pavankumar Videm9
  • Anika Erxleben8
  • Celia van Gelder8
  • Cristóbal Gallardo8
  • Geert van Geest8
  • Helen Brown8
  • Wandrille Duchemin8
  • Daniel Blankenberg7
  • Delphine Lariviere7
  • Joachim Wolff7
  • John Chilton7
  • Kaivan Kamali7
  • Korbinian Bösl7
  • Laura Cooper7
  • Marius van den Beek7
  • Martin Čech7
  • Robert Andrews7
  • Sergio Martínez Cuesta7
  • Allegra Via6
  • Andrew Mason6
  • Anne Pajon6
  • Branka Franicevic6
  • Coline Royaux6
  • ELIXIR Goblet Train the Trainers6
  • Elisabeth Gasteiger6
  • Melanie Föll6
  • Michael Charleston6
  • Patricia Palagi6
  • Philippe Rocca-Serra6
  • Sara Morsy6
  • Wolfgang Maier6
  • Xenia Perez Sitja6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Anna Syme5
  • Beatriz Serrano-Solano5
  • Clemens Blank5
  • Dechen Bhuming5
  • Egon Willighagen5
  • Erwan Corre5
  • Hans-Rudolf Hotz5
  • Katherine Do5
  • Kellie Snow5
  • Korneel Hens5
  • Laura Leroi5
  • Marie-Claude Blatter5
  • Mira Kuntz5
  • Morgan Howells5
  • Munazah Andrabi5
  • Nick Juty5
  • Personalized Health Informatics Group5
  • Pratik Jagtap5
  • Saskia Lawson-Tovey5
  • Alireza Khanteymoori4
  • Eija Korpelainen4
  • Emma Griffiths4
  • Engy Nasr4
  • Florian Heyl4
  • Frédéric de Lamotte4
  • Gildas Le Corguillé4
  • Grégoire Rossier4
  • Mallory Freeberg4
  • Marc Robinson-Rechavi4
  • Philippe Le Mercier4
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• • Contributor
  • Saskia Hiltemann393
  • Helena Rasche387
  • Björn Grüning263
  • Bérénice Batut179
  • Nicola Soranzo132
  • Cristóbal Gallardo82
  • Niall Beard72
  • Anthony Bretaudeau69
  • Martin Čech64
  • Nate Coraor60
  • Gildas Le Corguillé50
  • William Durand49
  • Wendi Bacon48
  • Mehmet Tekman43
  • Simon Gladman42
  • Marius van den Beek41
  • Lucille Delisle37
  • Yvan Le Bras32
  • Pavankumar Videm26
  • Teresa Müller25
  • Beatriz Serrano-Solano22
  • Maria Doyle22
  • Julia Jakiela20
  • Anne Fouilloux19
  • Khaled Jum'ah16
  • Melanie Föll16
  • Wolfgang Maier16
  • Anup Kumar15
  • Simon Bray15
  • Deepti Varshney14
  • Donny Vrins14
  • Bazante Sanders13
  • Marie Josse13
  • Matthias Bernt12
  • Pablo Moreno12
  • Anton Nekrutenko11
  • Mélanie Petera11
  • Peter van Heusden11
  • David López10
  • Gianmauro Cuccuru10
  • Marisa Loach10
  • Mira Kuntz10
  • Subina Mehta10
  • Katarzyna Kamieniecka9
  • John Chilton8
  • Paul Zierep8
  • Delphine Lariviere7
  • Hans-Rudolf Hotz7
  • Kaivan Kamali7
  • Melissa Burke7
  • Dave Clements6
  • Ekaterina Polkh6
  • Tomas Klingström6
  • Alex Ostrovsky5
  • Alexandre Cormier5
  • Alireza Khanteymoori5
  • Bert Droesbeke5
  • Florian Heyl5
  • John Davis5
  • Mallory Freeberg5
  • Pratik Jagtap5
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  • Anna Syme4
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  • Andrea Bagnacani3
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  • Miaomiao Zhou3
  • Nuwan Goonasekera3
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• • Resource type
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  • Computer Software2
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• • Related resource
  • Associated Training Datasets264
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  • ansible19
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  • Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
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• • Node
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