Training materials
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e-learning
Pangeo Notebook in Galaxy - Introduction to Xarray
• beginnerClimate interactive-tools jupyter-notebook pangeo -
e-learning
Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools
• beginnerClimate pangeo -
e-learning
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab
• beginnerClimate interactive-tools -
e-learning
Identification of the binding sites of the Estrogen receptor
• beginnerEpigenomics ChIP-seq Epigenetics work-in-progress -
e-learning
Formation of the Super-Structures on the Inactive X
• beginnerEpigenomics ChIP-seq Epigenetics -
e-learning
Data visualisation Olympics - Visualization in R
• beginnerSoftware engineering Foundations of Data Science R cyoa jupyter-notebook rmarkdown-notebook -
e-learning
Masking repeats with RepeatMasker
• beginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Functional annotation of protein sequences
• beginnerGenomics Function analysis Protein sites, features and motifs Genome Annotation biodiversity eukaryote -
e-learning
Genome annotation with Maker (short)
•• intermediateGenomics Genome Annotation eukaryote gmod jbrowse1 maker