- Home
- Materials
Filter
Sort
-
-
Filter Clear filters
-
-
Scientific topic
- Assembly8
- Biological sequences8
- Sequence analysis8
- Sequence assembly8
- Sequence databases8
- Exomes7
- Genome annotation7
- Genomes7
- Genomics7
- Personal genomics7
- Synthetic genomics7
- Viral genomics7
- Whole genomes7
- Metagenomics6
- Shotgun metagenomics6
- Community analysis5
- Comparative transcriptomics5
- DNA variation5
- Environmental microbiology5
- Genetic variation5
- Genomic variation5
- Microbial ecology5
- Microbiome5
- Molecular community analysis5
- Mutation5
- Polymorphism5
- Somatic mutations5
- Transcriptome5
- Transcriptomics5
- Antimicrobial stewardship4
- Epidemiology4
- Medical microbiology4
- Microbial genetics4
- Microbial physiology4
- Microbial surveillance4
- Microbiological surveillance4
- Microbiology4
- Molecular infection biology4
- Molecular microbiology4
- Public health4
- Public health and epidemiology4
- Taxonomy4
- De novo genome sequencing2
- Epigenomics2
- Function analysis2
- Functional analysis2
- Genome sequencing2
- Metatranscriptomics2
- Protein function analysis2
- Protein function prediction2
- WGS2
- Whole genome resequencing2
- Whole genome sequencing2
- AMR1
- Antibiotic resistance (ABR)1
- Antifungal resistance1
- Antimicrobial resistance1
- Antiprotozoal resistance1
- Antiviral resistance1
- Biodiversity1
- Communicable disease1
- Computational ecology1
- DNA polymorphism1
- Disease1
- Ecoinformatics1
- Ecological informatics1
- Ecology1
- Ecosystem science1
- Extensive drug resistance (XDR)1
- Infectious disease1
- Microsatellites1
- Multidrug resistance1
- Multiple drug resistance (MDR)1
- Multiresistance1
- Pandrug resistance (PDR)1
- Pathology1
- RFLP1
- SNP1
- Single nucleotide polymorphism1
- Total drug resistance (TDR)1
- Transmissible disease1
- VNTR1
- Variable number of tandem repeat polymorphism1
- snps1
- Show N_FILTERS more
-
-
-
Tool
- FastQC
- Galaxy324
- SAMtools27
- Bioconductor23
- MultiQC22
- BWA20
- fastp17
- BEDTools15
- scikit-learn15
- Cutadapt14
- Data Stewardship Wizard14
- SCANPY14
- JBrowse13
- BLAST12
- DeepTools12
- QUAST10
- STAR10
- ggplot210
- BUSCO9
- Falco9
- FreeBayes9
- GEMINI9
- taxonomy_krona_chart9
- NanoPlot8
- Trimmomatic8
- kraken28
- BCFtools7
- BamTools7
- FASTX-Toolkit7
- Galaxy Image Analysis7
- HISAT27
- RStudio7
- msConvert7
- scikit-image7
- Bandage6
- Biopython6
- MAFFT6
- MaxQuant6
- Open Babel6
- Workflow4Metabolomics6
- seqtk6
- Bowtie 25
- Flye5
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- StringTie5
- annotatemyids5
- compute_sequence_length5
- gffcompare5
- gffread5
- xcms5
- Bwa-mem24
- Chipster4
- Diamond4
- GOseq4
- HUMAnN24
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- SRA Software Toolkit4
- The Protein Data Bank (PDB)4
- Trim Galore4
- UniProt4
- anndata4
- mothur4
- snpEff4
- Apollo3
- Bracken3
- BridgeDb3
- BridgeDbR3
- Cardinal3
- CellProfiler3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- Ontology Lookup Service3
- QualiMap3
- R3
- RDKit3
- Salmon3
- SeqCode3
- SortMeRNA3
- Stacks3
- UCSC Genome Browser Utilities3
- Unicycler3
- Unipept3
- Vcflib3
- bed to protein map3
- Show N_FILTERS more
-
-
-
Content provider
- Galaxy Training32
- Show N_FILTERS more
-
-
-
Keyword
- microgalaxy9
- Assembly5
- Microbiome5
- Transcriptomics5
- Variant Analysis5
- assembly4
- Sequence analysis3
- nanopore3
- Epigenetics2
- Genome Annotation2
- Introduction to Galaxy Analyses2
- Single Cell2
- biodiversity2
- cyoa2
- metagenomics2
- metatranscriptomics2
- prokaryote2
- 10x1
- CRISPR1
- ChIP-seq1
- Community composition EBV class1
- EBV dataset1
- EBV workflow1
- Ecology1
- Genetic composition EBV class1
- Heatmap1
- Metabarcoding1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- QC1
- alternative splicing1
- amr1
- beer1
- bulk1
- cell line1
- citizen science1
- collections1
- covid191
- eDNA1
- epigenetics1
- español1
- essential genes1
- genome editing1
- gmod1
- illumina1
- isoform switching1
- jbrowse11
- mouse1
- one-health1
- plants1
- polishing1
- rna-seq1
- tuberculosis1
- viz1
- Show N_FILTERS more
-
-
-
Difficulty level
- Beginner29
- Intermediate2
- Advanced1
- Show N_FILTERS more
-
-
-
Target audience
- Students32
- Show N_FILTERS more
-
-
-
Author
- Bérénice Batut13
- Saskia Hiltemann5
- Maria Doyle4
- Pratik Jagtap3
- Subina Mehta3
- Alexandre Cormier2
- Anika Erxleben2
- Anna Syme2
- Anthony Bretaudeau2
- Anton Nekrutenko2
- Bazante Sanders2
- Cristóbal Gallardo2
- Emma Leith2
- Engy Nasr2
- Erwan Corre2
- Helena Rasche2
- Laura Leroi2
- Leily Rabbani2
- Nicola Soranzo2
- Paul Zierep2
- Pavankumar Videm2
- Polina Polunina2
- Praveen Kumar2
- Ray Sajulga2
- Simon Gladman2
- Stéphanie Robin2
- Wolfgang Maier2
- Ahmed Hamid Awan1
- Alex Ostrovsky1
- Ava Hoffman1
- Belinda Phipson1
- Björn Grüning1
- Cameron Hyde1
- Coline Royaux1
- Daniel Maticzka1
- David Salgado1
- Eric Coissac1
- Fidel Ramirez1
- Florian Heyl1
- Friederike Dündar1
- Frédéric Boyer1
- Harriet Dashnow1
- Iacopo Cristoferi1
- Katarzyna Kamieniecka1
- Kenji Fujihara1
- Khaled Jum'ah1
- Krzysztof Poterlowicz1
- Lucille Delisle1
- Marek Ostaszewski1
- Matti Hoch1
- Mehmet Tekman1
- Myrthe van Baardwijk1
- Natalie Kucher1
- Nick Stoler1
- Olivier Norvez1
- Peter van Heusden1
- Robert Meller1
- Siyu Chen1
- Sylvia Mahara1
- Teresa Müller1
- Thoba Lose1
- Torsten Houwaart1
- Twishi Gulati1
- Vivek Bhardwaj1
- Yvan Le Bras1
- Show N_FILTERS more
-
-
-
Contributor
- Helena Rasche32
- Saskia Hiltemann28
- Björn Grüning24
- Bérénice Batut23
- Cristóbal Gallardo18
- Nicola Soranzo11
- Anthony Bretaudeau8
- Wolfgang Maier8
- Niall Beard6
- Gildas Le Corguillé5
- Maria Doyle5
- Mehmet Tekman5
- Teresa Müller5
- William Durand5
- Lucille Delisle4
- Wendi Bacon4
- Alexandre Cormier3
- Deepti Varshney3
- Florian Heyl3
- Martin Čech3
- Mateo Boudet3
- Paul Zierep3
- Pavankumar Videm3
- Anna Syme2
- Anne Fouilloux2
- Anup Kumar2
- Armin Dadras2
- Bazante Sanders2
- Beatriz Serrano-Solano2
- David López2
- Engy Nasr2
- Joachim Wolff2
- Leily Rabbani2
- Linelle Abueg2
- Miaomiao Zhou2
- Morgan Howells2
- Mélanie Petera2
- Natalie Kucher2
- Nate Coraor2
- Simon Gladman2
- Swathi Nataraj2
- Verena Moosmann2
- Ahmed Hamid Awan1
- Alex Ostrovsky1
- Anika Erxleben1
- Anton Nekrutenko1
- Ava Hoffman1
- Bert Droesbeke1
- Candace Savonen1
- Ekaterina Polkh1
- Elizabeth Humphries1
- Frederick Tan1
- Hans-Rudolf Hotz1
- José Manuel Domínguez1
- Katarzyna Kamieniecka1
- Katherine Cox1
- Khaled Jum'ah1
- Marius van den Beek1
- Matthias Bernt1
- Matti Hoch1
- Matúš Kalaš1
- Mira Kuntz1
- Mohua Das1
- Nuwan Goonasekera1
- Peter van Heusden1
- Phil Reed1
- Polina Polunina1
- Sanjay Kumar Srikakulam1
- Simon Bray1
- Siyu Chen1
- Subina Mehta1
- Timon Schlegel1
- Vijay1
- Yvan Le Bras1
- pimarin1
- Show N_FILTERS more
-
-
-
Resource type
- e-learning26
- slides6
- Show N_FILTERS more
-
-
-
Related resource
- Associated Training Datasets32
- Associated Workflows31
- Show N_FILTERS more
-
- Show disabled materials
- Show archived materials