Training materials
Scientific topics: Synthetic genomics
and Related resources: Associated Training Datasets
43 materials found
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Scientific topic
- Synthetic genomics
- Exomes43
- Genome annotation43
- Genomes43
- Genomics43
- Personal genomics43
- Viral genomics43
- Whole genomes43
- Bottom-up proteomics36
- Discovery proteomics36
- MS-based targeted proteomics36
- MS-based untargeted proteomics36
- Metaproteomics36
- Peptide identification36
- Protein and peptide identification36
- Proteomics36
- Quantitative proteomics36
- Targeted proteomics36
- Top-down proteomics36
- Biological sequences31
- Sequence analysis31
- Sequence databases31
- Comparative transcriptomics26
- Transcriptome26
- Transcriptomics26
- Bayesian methods24
- Biostatistics24
- Descriptive statistics24
- Gaussian processes24
- Inferential statistics24
- Markov processes24
- Multivariate statistics24
- Probabilistic graphical model24
- Probability24
- Statistics24
- Statistics and probability24
- Antimicrobial stewardship22
- Assembly22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- Sequence assembly22
- Community analysis20
- Environmental microbiology20
- Microbial ecology20
- Microbiome20
- Molecular community analysis20
- Metagenomics19
- Shotgun metagenomics19
- Computational ecology14
- Ecoinformatics14
- Ecological informatics14
- Ecology14
- Ecosystem science14
- Algorithms13
- Computer programming13
- Data structures13
- Programming languages13
- Software development13
- Software engineering13
- Taxonomy13
- DNA variation12
- Genetic variation12
- Genomic variation12
- Mutation12
- Polymorphism12
- Somatic mutations12
- Epigenomics11
- Diffraction experiment10
- Evolution10
- Evolutionary biology10
- Exometabolomics10
- Imaging10
- LC-MS-based metabolomics10
- MS-based metabolomics10
- MS-based targeted metabolomics10
- MS-based untargeted metabolomics10
- Mass spectrometry-based metabolomics10
- Metabolites10
- Metabolome10
- Metabolomics10
- Metabonomics10
- Microscopy10
- Microscopy imaging10
- NMR-based metabolomics10
- Optical super resolution microscopy10
- Photonic force microscopy10
- Photonic microscopy10
- Biodiversity9
- Computational chemistry7
- De novo genome sequencing6
- Epidemiology6
- Genome sequencing6
- Public health6
- Public health and epidemiology6
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Tool
- Galaxy41
- JBrowse11
- FastQC7
- BUSCO5
- fastp5
- MultiQC4
- QUAST4
- kraken24
- Apollo3
- BEDTools3
- Bandage3
- Cutadapt3
- Minimap23
- gffread3
- snippy3
- BCFtools2
- BLAST2
- Bakta2
- Bracken2
- Bwa-mem22
- COMBAT-TB Workbench2
- Clustal 1.8 (Clustal W, Clustal X)2
- Diamond2
- Falco2
- Flye2
- GECKO2
- GenomeScope 2.02
- InterProScan (EBI)2
- MAGeCK2
- NanoPlot2
- OMArk2
- Recentrifuge2
- SAMtools2
- STAR2
- eggNOG-mapper v22
- gfastats2
- tb-profiler2
- tbl2gff32
- AUGUSTUS1
- BWA1
- BamTools1
- Bowtie1
- Bowtie 21
- CheckM1
- Circos1
- DeepTools1
- FEELnc1
- FastTree1
- Filtlong1
- FreeBayes1
- GAEVAL1
- Galactic Circos1
- Helixer1
- ISEScan1
- Integron Finder1
- Jvarkit1
- MAFFT1
- MAKER1
- Medaka1
- Merqury1
- NCBI Datasets1
- NCBI Resources1
- PPanGGOLiN1
- PlasmidFinder1
- Polypolish1
- QualiMap1
- RAxML1
- RED1
- Racon1
- RapidNJ1
- RepeatMasker1
- RepeatModeler1
- SALSA1
- SNAP1
- TRANSIT1
- Trimmomatic1
- Unicycler1
- Vcflib1
- antiSMASH1
- bx-python1
- chemfp1
- compute_sequence_length1
- dRep1
- funannotate1
- ggplot21
- orfipy1
- purge_dups1
- shovill1
- staramr1
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Content provider
- Galaxy Training43
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Keyword
- Genome Annotation26
- microgalaxy20
- biodiversity13
- prokaryote13
- jbrowse112
- gmod11
- eukaryote9
- Assembly8
- illumina5
- work-in-progress5
- bacteria4
- one-health4
- Evolution3
- Variant Analysis3
- apollo23
- assembly3
- amr2
- essential genes2
- eukaryota2
- maker2
- nanopore2
- plants2
- Braker31
- CRISPR1
- Ecology1
- Microbiome1
- Sequence analysis1
- VGP1
- annotation1
- cell line1
- cookbook1
- cyoa1
- evolution1
- genome editing1
- helixer1
- pacbio1
- phylogenetics1
- polishing1
- tnseq1
- tuberculosis1
- vgp1
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Difficulty level
- Beginner32
- Intermediate10
- Advanced1
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Target audience
- Students43
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Author
- Bérénice Batut12
- Anthony Bretaudeau11
- Delphine Lariviere6
- Anton Nekrutenko5
- Anna Syme4
- Hélène Chiapello4
- Simon Gladman4
- Valentin Loux4
- Bazante Sanders3
- Helena Rasche3
- Alex Ostrovsky2
- Christoph Stritt2
- Daniela Brites2
- Esteban Perez-Wohlfeil2
- Galo A. Goig2
- Maria Doyle2
- Mateo Boudet2
- Nathan Dunn2
- Romane LIBOUBAN2
- Stéphanie Robin2
- Torsten Seemann2
- Alexandre Cormier1
- Anika Erxleben1
- Björn Grüning1
- Brandon Pickett1
- Clea Siguret1
- Cristóbal Gallardo1
- Didier Debroas1
- Erwan Corre1
- Giulio Formenti1
- Guillaume Gautreau1
- Jonathan Kreplak1
- Kenji Fujihara1
- Laura Leroi1
- Linelle Abueg1
- Marcella Sozzoni1
- Nadia Goué1
- Paul Zierep1
- Peter van Heusden1
- Sylvia Mahara1
- Thoba Lose1
- Twishi Gulati1
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Contributor
- Saskia Hiltemann34
- Helena Rasche33
- Bérénice Batut30
- Björn Grüning29
- Anthony Bretaudeau25
- Cristóbal Gallardo9
- Deepti Varshney7
- Nicola Soranzo7
- Niall Beard6
- Anton Nekrutenko5
- Teresa Müller5
- Wolfgang Maier5
- Delphine Lariviere4
- Gildas Le Corguillé4
- Peter van Heusden4
- Anna Syme3
- Bazante Sanders3
- Maria Doyle3
- Miaomiao Zhou3
- Simon Bray3
- Stéphanie Robin3
- William Durand3
- Christoph Stritt2
- Clea Siguret2
- Esteban Perez-Wohlfeil2
- Jonathan Kreplak2
- Laura Leroi2
- Linelle Abueg2
- Mélanie Petera2
- Nate Coraor2
- Paul Zierep2
- Romane LIBOUBAN2
- Simon Gladman2
- Verena Moosmann2
- pimarin2
- Alex Ostrovsky1
- Alexandre Cormier1
- Donny Vrins1
- Ekaterina Polkh1
- Enis Afgan1
- Erwan Corre1
- Felicitas Kindel1
- Galo A. Goig1
- Jasper Ouwerkerk1
- Jennifer Hillman-Jackson1
- Lucille Delisle1
- Marius van den Beek1
- Matúš Kalaš1
- Solenne Correard1
- Vijay1
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Resource type
- e-learning40
- slides3
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