Training materials
Scientific topics: Shotgun metagenomics
and Related resources: Associated Training Datasets
and Tools: MaxQuant
2 materials found
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Scientific topic
- Shotgun metagenomics
- Bottom-up proteomics3
- Discovery proteomics3
- MS-based targeted proteomics3
- MS-based untargeted proteomics3
- Metaproteomics3
- Peptide identification3
- Protein and peptide identification3
- Proteomics3
- Quantitative proteomics3
- Targeted proteomics3
- Top-down proteomics3
- Community analysis2
- Environmental microbiology2
- Metagenomics2
- Microbial ecology2
- Microbiome2
- Molecular community analysis2
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Tool
- MaxQuant
- Galaxy24
- taxonomy_krona_chart9
- FastQC6
- MetaPhlAn5
- Cutadapt4
- HUMAnN24
- KrakenTools4
- MultiQC4
- kraken24
- GraPhlAn3
- Newick Utilities3
- SortMeRNA3
- export2graphlan3
- fastp3
- humann3
- mothur3
- BamTools2
- Bandage2
- MEGAHIT2
- Minimap22
- NanoPlot2
- UniProt2
- ggplot22
- metaQuantome2
- ABRicate1
- BCFtools1
- BEDTools1
- Bowtie 21
- Bracken1
- CheckM1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- FastTree1
- Flye1
- Krona1
- MLST1
- MSstats1
- Medaka1
- MetaNovo1
- NGSUtils1
- QUAST1
- Racon1
- SAMtools1
- Unicycler1
- Unipept1
- dada21
- lotus21
- metaspades1
- miniasm1
- msConvert1
- phyloseq1
- seqtk1
- staramr1
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Content provider
- Galaxy Training2
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Difficulty level
- Beginner2
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Target audience
- Students2
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Contributor
- Pratik Jagtap2
- Timothy J. Griffin2
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Resource type
- e-learning2
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Related resource
- Associated Training Datasets
- Associated Workflows2
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