Workflows
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ChIP-seq workflow
Basic workflow for ChIP-seq analysis
Topic: ChIP-seq
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ChIP-seq workflow (with intermediate data)
Basic workflow for ChIP-seq analysis
Topic: ChIP-seq
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ChIP-seq workflow in Bioconductor
Basic workflow for ChIP-seq analysis using Bioconductor from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5389943/
Topic: ChIP-seq
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EBI metagenomics pipeline 2.0
EBI metagenomics pipeline 2.0
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ELIXIR Structural Bioinformatics 1: Getting a structure for a protein of interest
This training workflow is designed to lead you through the process of finding experimentally-determined structures for a protein you are interested in - or predicting structure information if one is not available.
It will then help guide you through visualising that structure as a prerequisite...
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ELIXIR Structural Bioinformatics 2: Exploring protein domains and functional sites
This training workflow introduces how to search (using query protein sequences or structures) for protein domains, conservation and protein family information, surface and topological interfaces, and possible ligand binding sites.
It is designed to lead you through the process of finding...
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ELIXIR Structural Bioinformatics 3: Predicting the effect of mutation on protein function
This workflow builds on the previous training workflows in this series on building protein models and identifying functional domains or ligand binding sites - and introduces methods to predict how mutations can impact on protein function.
It is designed to lead you through the process of...
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EMBER: A practical guide to Bioinformatics
This practical introduces a range of Web-based databases and tools, allowing their relative strengths and weaknesses to be compared. The practical comprises several modules, each broken down into simple steps.
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Homology Modelling with SWISS-MODEL
This is the workflow of homology modelling with the SWISS-MODEL expert system
SWISS-MODEL is a web-based integrated service dedicated to protein structure homology modelling. It guides the user in building protein homology models at [different levels of...
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Image analysis
Imaging (http://edamontology.org/topic_3382)
Bioimage informatics (EDAM-bioimaging)