Date: 21 June 2023 @ 09:00 - 17:00

Patient-derived cancer models (PDCMs) have become an essential tool in both cancer research and preclinical studies. Each model type offers unique advantages and is better suited for specific research areas: cell lines are low cost and allow high throughput assays, organoids model the impact of intratumour heterogeneity, tumour evolution, and drug response, and patient-derived xenografts (PDXs) retain the tumour architecture to better predict patient response to treatment. Seamless access to PDCMs is, however, hindered by the lack of shared data standards. As such, PDCMs stakeholders - i.e., researchers, clinicians, bioinformaticians and analytical tool developers - are faced with the challenge to navigate a complex and siloed landscape across multiple commercial and academic resources.

CancerModels.Org is a new cancer research platform that aggregates clinical, genomic, and functional data from PDXs, organoids and cell lines. The platform addresses the needs of the stakeholders by standardising, harmonising, and integrating the complex and diverse data associated with patient-derived cancer models. Its foundation is underpinned by our efforts to develop and promote the use of descriptive standards (e.g., PDX-MI, PMID: 29092942) to facilitate data interoperability and global sharing of models. Further value is provided by enriching the models and data with concepts from well-established terminologies (e.g. NCI Thesaurus) and links to external resources, such as, publication platforms, raw data archives and cancer specific annotation tools enabling exploration and prioritisation of cancer model variation data. CancerModels.Org is freely available under an Apache 2.0 license (https://github.com/PDCMFinder).

Keywords: Data integration, Advances in spatial omics, RNA FISH, Spatial multi-omics, BioImage Archive, Single cell, Spatial transcriptomics, Tissue biology, Cell-cell interactions, Cell signalling, cell-cell communication, cell-cell interaction, single-cells, Scientific communication, Scientific presentation, Data presentation, Research presentation, Protein Data Bank in Europe, Ensembl, UniProt: The Universal Protein Resource, AlphaFold Database, Proteins (proteins), DNA & RNA (dna-rna), Variant prediction, Fermentation, Microbial ecosystems webinar, Antimicrobial resistance, BLAST, Open Targets Platform, Cross domain (cross-domain), Chemical biology (chemical-biology), Drug discovery, Drug target identification, UniRule, ARBA, Automated annotation, MetaboLights: Metabolomics repository and reference database, Chemical Entities of Biological Interest, ChEBI, Metabolites, Molecular building blocks of life, Human Cell Atlas Data Coordination Platform, Single-cell transcriptomics, HCA data portal, Programmatic access, API, Python, Complex Portal, macromolecular assembly, InterPro, Boolean modelling, Europe PubMed Central, Literature (literature), Open access, Protein Data Bank in Europe - Knowledge Base, 3D structure, DeepMind, Artificial intelligence, AI, Structure prediction, cancer, Boolean, Ensembl Genomes, European Nucleotide Archive, Data archive, Raw sequencing data, RNAcentral, Non-coding RNA, ncRNA, GPU, Data protection, Job dispatcher, Bioimage analysis resource

Organizer: European Bioinformatics Institute (EBI)

Capacity: 1000

Event types:

  • Workshops and courses


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