Methods in genomic variant calling
Date: 30 March 2022 @ 09:00 - 17:00
Genomic variant calling entails identifying single nucleotide polymorphisms, small insertions and deletion (InDels) and larger variants (structural variants and copy-number variants) from next generation sequencing data.
This webinar will cover the basics of germline and somatic variant calling as well as their annotation and visualisation. We will get to know workflows to perform variant calling, look at relevant file formats and discuss some variant calling applications in rare diseases, cancer genomics and population genomics.
Keywords: Data integration, Advances in spatial omics, RNA FISH, Spatial multi-omics, BioImage Archive, Single cell, Spatial transcriptomics, Tissue biology, Cell-cell interactions, Cell signalling, cell-cell communication, cell-cell interaction, single-cells, Scientific communication, Scientific presentation, Data presentation, Research presentation, Protein Data Bank in Europe, Ensembl, UniProt: The Universal Protein Resource, AlphaFold Database, Proteins (proteins), DNA & RNA (dna-rna), Variant prediction, Fermentation, Microbial ecosystems webinar, Antimicrobial resistance, BLAST, Open Targets Platform, Cross domain (cross-domain), Chemical biology (chemical-biology), Drug discovery, Drug target identification, UniRule, ARBA, Automated annotation, MetaboLights: Metabolomics repository and reference database, Chemical Entities of Biological Interest, ChEBI, Metabolites, Molecular building blocks of life, Human Cell Atlas Data Coordination Platform, Single-cell transcriptomics, HCA data portal, Programmatic access, API, Python, Complex Portal, macromolecular assembly, InterPro, Boolean modelling, Europe PubMed Central, Literature (literature), Open access, Protein Data Bank in Europe - Knowledge Base, 3D structure, DeepMind, Artificial intelligence, AI, Structure prediction, cancer, Boolean, Ensembl Genomes, European Nucleotide Archive, Data archive, Raw sequencing data, RNAcentral, Non-coding RNA, ncRNA, GPU, Data protection, Job dispatcher, Bioimage analysis resource, Accessibility, Missense variation, Biostatistics, Rfam, non-coding RNA, Infernal software, Sequence annotation, Root microbiome, Abiotic stress, land management, Plant genotype, Plant webinar series, HPC, database development, cross-linked databases, Plant database, data infrastructure, Plant breeding, Data standards, data managemnet, data sharing, Hyb-Seq method, Flowering plants, Crop improvement, Pangenomics, Pangenomes, Virtual humans, Drug-target identification, plant-microbe interactions, Plant research, Drug targets, Machine learning, Mathematical modelling, plant science, plant-environment interaction, Phenotyping, field phenotyping, Deep phenotyping, EOSC-Life, NHGRI-EBI GWAS Catalog, clinical data, genome-wide association, plants, European Variation Archive, EVA, Variant clusters, Variant data annotation, Constraint-based metabolic modelling, UniProt knowledgebase, protein variant impact, disease-associated protein variants, Bioethics, FAIR principles, ELSI, cohort data, translational research, BioModels database, Mathematical modeling, Reproducibity, Systems biology models, workflows, federated analysis, polygenic risk scores, IntAct Molecular Interaction Database, PSICQUIC, IMEx, Complex portal, Agent-based modelling, Macrophages, Tumorigenesis, Training (Training), On-demand, teaching, introduction, Building blocks, Data analysis, COSMIC, Cancer mutation, Somatic mutation, ChEMBL: Bioactive data for drug discovery, Chemical compounds, drug-like molecules, Chemogenomics, Biocurator, Programming, Data management, Green Algorithms, Open data, Environmental impact, Carbon footprint, HPC workflows, Orchestrator, Gene expression (gene-expression), Chemosensitivity assay, Experimental protocols, Drug screening, MICHA, European Genome-phenome Archive, EGA, restricted access, UniProt, Introduction, UniProtKB, Proteome, genes, Introductory, GDPR, Data security, Expression Atlas, Pfam, protein sequence search, Domain architecture, Protein taxonomy, AI structure prediction, COVID-19, Coronavirus, COVID-19 Data Portal, Virology, Computational simulations, Signalling prior knowledge, Cancer therapy response, PRIDE: The Proteomics Identifications Database, protein structure prediction, AI system, Competency framework, Publication, Journal club, Preprints, Aggregated view, Structural similarity, PPI networks, Cell signaling, Malaria, Biological networks, Graph theory, Building biological networks, Biocuration, Information Manager, Industry, Rare-variant, Variant association, SKAT, Sensitive data, Human cohort data, FAIR
Organizer: European Bioinformatics Institute (EBI)
Target audience: Plant research, Plant research
Capacity: 1000
Event types:
- Workshops and courses
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