Eukaryotic Genome Sequence Assembly and Annotation

A learning path set for Eukaryotic Genome Sequence Assembly and Annotation data management with 3 domains : FAIR essentials, genome assembly, and genome annotation.

Licence: Creative Commons Attribution 4.0 International

Keywords: Data management, Sequence assembly, Genomics, FAIR

Scientific topics: Biodiversity, Genomics, Sequence assembly, Sequence analysis, FAIR data

Status: Under development

Learning objectives:

At the end of the learning path, researchers or data managers specialized in biodiversity genomics are able to :
- retrieve metadata for the biological materials of their interest
- retrieve unique identifiers for their samples from BioSamples
- retrieve metadata on omics experiments
- publish metadata on omics experiments in the recommended databases
- use tools to version their metadata curation before publication
- submit the raw data and the annotated genomes to ENA, the samples to BioSamples with the correct metadata
- analyze the data of the genome in reproducible way and manage the data in a FAIR way

People should be able to do genome assembly by themself (starting with raw data), and do the functional annotation of the genome that they obtain.

2

Introduction to genome sequencing

•• intermediate 1 material
4

Eukaryotic Genome Annotation

••• advanced 0 materials
Activity log