Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly1
    • Biological sequences1
    • Community analysis1
    • Comparative transcriptomics1
    • Disease1
    • Environmental microbiology1
    • Epidemiology1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Pathology1
    • Public health1
    • Public health and epidemiology1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Shotgun metagenomics1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • Show N_FILTERS more
    • Tool
    • Galaxy4
    • MultiQC2
    • SAMtools2
    • ggplot22
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Cutadapt1
    • DESeq21
    • Falco1
    • FastQC1
    • FastTree1
    • FeatureCounts1
    • Flye1
    • GOseq1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • NanoPlot1
    • Newick Utilities1
    • R1
    • RSeQC1
    • SCANPY1
    • STAR1
    • bx-python1
    • fastp1
    • kraken21
    • pathview1
    • pyGenomeTracks1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • cyoa2
    • 10x1
    • Heatmap1
    • Introduction to Galaxy Analyses1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • QC1
    • Single Cell1
    • Transcriptomics1
    • bulk1
    • collections1
    • drosophila1
    • microgalaxy1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Pavankumar Videm3
    • Clemens Blank2
    • Hans-Rudolf Hotz2
    • Lucille Delisle2
    • Maria Doyle2
    • Mehmet Tekman2
    • Nicola Soranzo2
    • Anika Erxleben1
    • Anne Pajon1
    • Björn Grüning1
    • Daniel Blankenberg1
    • Diana Chiang Jurado1
    • Dilmurat Yusuf1
    • Engy Nasr1
    • Florian Heyl1
    • Helena Rasche1
    • Mallory Freeberg1
    • Mo Heydarian1
    • Paul Zierep1
    • Peter van Heusden1
    • Sarah Peter1
    • Vlad Visan1
    • Show N_FILTERS more
    • Contributor
    • Hans-Rudolf Hotz
    • Saskia Hiltemann77
    • Bérénice Batut73
    • Björn Grüning68
    • Helena Rasche67
    • Nicola Soranzo35
    • Cristóbal Gallardo28
    • Niall Beard25
    • Anthony Bretaudeau24
    • Martin Čech21
    • William Durand19
    • Teresa Müller15
    • Armin Dadras14
    • Gildas Le Corguillé14
    • Wendi Bacon13
    • Paul Zierep9
    • Wolfgang Maier9
    • Anup Kumar7
    • Simon Bray6
    • Clea Siguret5
    • Deepti Varshney5
    • Maria Doyle5
    • Mehmet Tekman5
    • Nate Coraor5
    • olisand5
    • Ekaterina Polkh4
    • Pavankumar Videm4
    • Simon Gladman4
    • Wandrille Duchemin4
    • Yvan Le Bras4
    • Anne Fouilloux3
    • Bazante Sanders3
    • Bert Droesbeke3
    • Engy Nasr3
    • Florian Heyl3
    • Lucille Delisle3
    • Marius van den Beek3
    • Miaomiao Zhou3
    • Alexandre Cormier2
    • Amirhossein Naghsh Nilchi2
    • Andrea Bagnacani2
    • Anika Erxleben2
    • Christine Oger2
    • Clemens Blank2
    • Dave Clements2
    • David López2
    • Joachim Wolff2
    • Johan Gustafsson2
    • Leily Rabbani2
    • Linelle Abueg2
    • Mateo Boudet2
    • Mateusz Kuzak2
    • Matthias Bernt2
    • Phil Reed2
    • Swathi Nataraj2
    • Verena Moosmann2
    • pimarin2
    • Alireza Khanteymoori1
    • Beatriz Serrano-Solano1
    • Cyril Monjeaud1
    • Delphine Lariviere1
    • Fidel Ramirez1
    • Graeme Tyson1
    • Jasper Ouwerkerk1
    • Jennifer Hillman-Jackson1
    • Julia Jakiela1
    • Lisanna Paladin1
    • Marie Josse1
    • Marisa Loach1
    • Matúš Kalaš1
    • Melissa Burke1
    • Michele Maroni1
    • Nadia Goué1
    • Natalie Kucher1
    • Nuwan Goonasekera1
    • Pablo Moreno1
    • Peter van Heusden1
    • Polina Polunina1
    • Rahmot Afolabi1
    • Siyu Chen1
    • Sophia Hampe1
    • Stéphanie Robin1
    • Tarnima Omara1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets4
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Hans-Rudolf Hotz

and Licence: Creative Commons Attribution 4.0 International

and Authors: Bérénice Batut

4 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Clustering 3K PBMCs with Scanpy

    • beginner
    10x Single Cell
  • e-learning

    From peaks to genes

    • beginner
    Introduction to Galaxy Analyses
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.