Materials - TeSS Sandbox (Training eSupport System)

Training materials

Register training material

Content provider: Galaxy Training

and Licence: Creative Commons Attribution 4.0 International

and Authors: Delphine Lariviere

10 materials found

e-learning

Decontamination of a genome assembly

• beginner
Sequence assembly Assembly
e-learning

Assembly of the mitochondrial genome from PacBio HiFi reads

• beginner
Sequence assembly Assembly
e-learning

Essential genes detection with Transposon insertion sequencing

• beginner
Genomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq
e-learning

Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

•• intermediate
Sequence assembly Assembly VGP eukaryote pacbio
e-learning

Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data

•• intermediate
Sequence assembly Assembly VGP eukaryote pacbio
e-learning

Making sense of a newly assembled genome

• beginner
Sequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
e-learning

Unicycler Assembly

• beginner
Sequence assembly Genomics Microbiology Assembly microgalaxy prokaryote
e-learning

Use Jupyter notebooks in Galaxy

• beginner
Using Galaxy and Managing your Data
e-learning

ERGA post-assembly QC

• beginner
Sequence assembly Assembly QC animals assembly genome plants
slides

Deeper look into Genome Assembly algorithms

•• intermediate
Sequence assembly Assembly