Training materials
Target audience: Students
and Licence: Creative Commons Attribution 4.0 International
and Authors: Delphine Lariviere
10 materials found
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e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Assembly -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Assembly -
e-learning
Essential genes detection with Transposon insertion sequencing
• beginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq -
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
e-learning
Use Jupyter notebooks in Galaxy
• beginnerUsing Galaxy and Managing your Data -
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly