Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Community analysis3
    • Environmental microbiology3
    • Microbial ecology3
    • Microbiome3
    • Molecular community analysis3
    • Antimicrobial stewardship2
    • Biological sequences2
    • De novo genome sequencing2
    • Exomes2
    • Genome annotation2
    • Genome sequencing2
    • Genomes2
    • Genomics2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Sequence analysis2
    • Sequence databases2
    • Synthetic genomics2
    • Viral genomics2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Whole genomes2
    • Comparative transcriptomics1
    • Computational ecology1
    • DNA metabarcoding1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Metabarcoding1
    • Metagenomics1
    • RNA metabarcoding1
    • Shotgun metagenomics1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy4
    • Bracken2
    • Falco2
    • Recentrifuge2
    • kraken22
    • Cutadapt1
    • DESeq21
    • FeatureCounts1
    • GOseq1
    • MultiQC1
    • R1
    • RSeQC1
    • SAMtools1
    • STAR1
    • dada21
    • fastp1
    • ggplot21
    • pathview1
    • phyloseq1
    • pyGenomeTracks1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • bacteria2
    • illumina2
    • 16S1
    • Ecology1
    • Microbiome1
    • QC1
    • Sequence analysis1
    • Transcriptomics1
    • bulk1
    • collections1
    • cyoa1
    • drosophila1
    • metabarcoding1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Anika Erxleben1
    • Clea Siguret1
    • Clemens Blank1
    • Lucille Delisle1
    • Mallory Freeberg1
    • Maria Doyle1
    • Mo Heydarian1
    • Nicola Soranzo1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Show N_FILTERS more
    • Contributor
    • Clea Siguret
    • Saskia Hiltemann35
    • Bérénice Batut34
    • Helena Rasche32
    • Björn Grüning30
    • Anthony Bretaudeau14
    • Nicola Soranzo13
    • Teresa Müller13
    • Cristóbal Gallardo11
    • Niall Beard10
    • Armin Dadras7
    • Gildas Le Corguillé7
    • Martin Čech7
    • Paul Zierep7
    • William Durand7
    • Wolfgang Maier6
    • Deepti Varshney5
    • Maria Doyle5
    • Hans-Rudolf Hotz4
    • Mehmet Tekman4
    • Bazante Sanders3
    • Ekaterina Polkh3
    • Engy Nasr3
    • Florian Heyl3
    • Miaomiao Zhou3
    • Nate Coraor3
    • Pavankumar Videm3
    • Simon Bray3
    • Alexandre Cormier2
    • Amirhossein Naghsh Nilchi2
    • Anika Erxleben2
    • Anne Fouilloux2
    • Anup Kumar2
    • Bert Droesbeke2
    • Christine Oger2
    • Clemens Blank2
    • Joachim Wolff2
    • Leily Rabbani2
    • Lucille Delisle2
    • Marius van den Beek2
    • Mateo Boudet2
    • Matthias Bernt2
    • Swathi Nataraj2
    • Verena Moosmann2
    • Wendi Bacon2
    • pimarin2
    • Alireza Khanteymoori1
    • Cyril Monjeaud1
    • Dave Clements1
    • David López1
    • Delphine Lariviere1
    • Fidel Ramirez1
    • Graeme Tyson1
    • Linelle Abueg1
    • Lisanna Paladin1
    • Mateusz Kuzak1
    • Matúš Kalaš1
    • Natalie Kucher1
    • Nuwan Goonasekera1
    • Polina Polunina1
    • Siyu Chen1
    • Sophia Hampe1
    • Stéphanie Robin1
    • Tarnima Omara1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Authors: Bérénice Batut

and Contributors: Clea Siguret

and Related resources: Associated Training Datasets

4 materials found
  • e-learning

    Quality and contamination control in bacterial isolate using Illumina MiSeq Data

    • beginner
    Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Checking expected species and contamination in bacterial isolate

    • beginner
    Ecology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Building an amplicon sequence variant (ASV) table from 16S data using DADA2

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.