Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly4
    • Sequence assembly4
    • Epidemiology3
    • Public health3
    • Public health and epidemiology3
    • Antimicrobial stewardship2
    • De novo genome sequencing2
    • Exomes2
    • Genome annotation2
    • Genome sequencing2
    • Genomes2
    • Genomics2
    • Medical microbiology2
    • Metagenomics2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Shotgun metagenomics2
    • Synthetic genomics2
    • Viral genomics2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Whole genomes2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Biological sequences1
    • Community analysis1
    • Disease1
    • Environmental microbiology1
    • Extensive drug resistance (XDR)1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • Sequence analysis1
    • Sequence databases1
    • Taxonomy1
    • Total drug resistance (TDR)1
    • Show N_FILTERS more
    • Tool
    • Bandage
    • Galaxy44
    • FastQC11
    • SAMtools7
    • taxonomy_krona_chart7
    • Cutadapt6
    • MultiQC6
    • fastp5
    • kraken25
    • DeepTools4
    • Falco4
    • KrakenTools4
    • MetaPhlAn4
    • BEDTools3
    • BamTools3
    • Bowtie 23
    • Bracken3
    • HUMAnN23
    • JBrowse3
    • NanoPlot3
    • Newick Utilities3
    • QUAST3
    • STAR3
    • ggplot23
    • mothur3
    • BCFtools2
    • Bakta2
    • FastTree2
    • Flye2
    • GraPhlAn2
    • Minimap22
    • Recentrifuge2
    • SortMeRNA2
    • export2graphlan2
    • humann2
    • seqtk2
    • tbl2gff32
    • ABRicate1
    • BLAST1
    • BWA1
    • Bowtie1
    • Bwa-mem21
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • FASTQE1
    • FeatureCounts1
    • Filtlong1
    • FreeBayes1
    • GEMINI1
    • GOseq1
    • ISEScan1
    • Integron Finder1
    • JBrowse 21
    • Krona1
    • MACS1
    • MEGAHIT1
    • MEME1
    • MLST1
    • Medaka1
    • NCBI Datasets1
    • NGSUtils1
    • Nextclade1
    • PPanGGOLiN1
    • Peakachu1
    • PlasmidFinder1
    • Polypolish1
    • R1
    • RCAS1
    • RSeQC1
    • SCANPY1
    • TRANSIT1
    • Trim Galore1
    • Trimmomatic1
    • UCSC Genome Browser Utilities1
    • UMI-tools1
    • bx-python1
    • dRep1
    • dada21
    • metaspades1
    • pangolin1
    • pathview1
    • phyloseq1
    • pyGenomeTracks1
    • pycoQC1
    • scikit-learn1
    • shovill1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy4
    • Assembly3
    • assembly3
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • amr1
    • cyoa1
    • illumina1
    • metagenomics1
    • nanopore1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Bazante Sanders2
    • Anna Syme1
    • Cristóbal Gallardo1
    • Delphine Lariviere1
    • Engy Nasr1
    • Fabian Recktenwald1
    • Paul Zierep1
    • Polina Polunina1
    • Tom Brown1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut4
    • Helena Rasche4
    • Saskia Hiltemann4
    • Björn Grüning3
    • Cristóbal Gallardo3
    • Anthony Bretaudeau2
    • Bazante Sanders2
    • Deepti Varshney2
    • Miaomiao Zhou2
    • Wolfgang Maier2
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Matúš Kalaš1
    • Nate Coraor1
    • Paul Zierep1
    • Polina Polunina1
    • Teresa Müller1
    • Verena Moosmann1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets4
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Tools: Bandage

and Authors: Bérénice Batut

and Resource type: e-learning

4 e-learning materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    Assembly of metagenomic sequencing data

    • beginner
    Sequence assembly Metagenomics Assembly assembly metagenomics microgalaxy
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.