Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly2
    • Biological sequences2
    • Epidemiology2
    • Public health2
    • Public health and epidemiology2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antimicrobial stewardship1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Community analysis1
    • De novo genome sequencing1
    • Disease1
    • Environmental microbiology1
    • Exomes1
    • Extensive drug resistance (XDR)1
    • Genome annotation1
    • Genome sequencing1
    • Genomes1
    • Genomics1
    • Medical microbiology1
    • Metagenomics1
    • Microbial ecology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microbiome1
    • Molecular community analysis1
    • Molecular infection biology1
    • Molecular microbiology1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • Personal genomics1
    • Shotgun metagenomics1
    • Synthetic genomics1
    • Taxonomy1
    • Total drug resistance (TDR)1
    • Viral genomics1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • NanoPlot
    • Galaxy44
    • FastQC11
    • SAMtools7
    • taxonomy_krona_chart7
    • Cutadapt6
    • MultiQC6
    • fastp5
    • kraken25
    • Bandage4
    • DeepTools4
    • Falco4
    • KrakenTools4
    • MetaPhlAn4
    • BEDTools3
    • BamTools3
    • Bowtie 23
    • Bracken3
    • HUMAnN23
    • JBrowse3
    • Newick Utilities3
    • QUAST3
    • STAR3
    • ggplot23
    • mothur3
    • BCFtools2
    • Bakta2
    • FastTree2
    • Flye2
    • GraPhlAn2
    • Minimap22
    • Recentrifuge2
    • SortMeRNA2
    • export2graphlan2
    • humann2
    • seqtk2
    • tbl2gff32
    • ABRicate1
    • BLAST1
    • BWA1
    • Bowtie1
    • Bwa-mem21
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • FASTQE1
    • FeatureCounts1
    • Filtlong1
    • FreeBayes1
    • GEMINI1
    • GOseq1
    • ISEScan1
    • Integron Finder1
    • JBrowse 21
    • Krona1
    • MACS1
    • MEGAHIT1
    • MEME1
    • MLST1
    • Medaka1
    • NCBI Datasets1
    • NGSUtils1
    • Nextclade1
    • PPanGGOLiN1
    • Peakachu1
    • PlasmidFinder1
    • Polypolish1
    • R1
    • RCAS1
    • RSeQC1
    • SCANPY1
    • TRANSIT1
    • Trim Galore1
    • Trimmomatic1
    • UCSC Genome Browser Utilities1
    • UMI-tools1
    • bx-python1
    • dRep1
    • dada21
    • metaspades1
    • pangolin1
    • pathview1
    • phyloseq1
    • pyGenomeTracks1
    • pycoQC1
    • scikit-learn1
    • shovill1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • microgalaxy2
    • Assembly1
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • amr1
    • assembly1
    • cyoa1
    • nanopore1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Anna Syme2
    • Alexandre Cormier1
    • Anthony Bretaudeau1
    • Bazante Sanders1
    • Cameron Hyde1
    • Engy Nasr1
    • Erwan Corre1
    • Laura Leroi1
    • Maria Doyle1
    • Paul Zierep1
    • Saskia Hiltemann1
    • Stéphanie Robin1
    • Willem de Koning1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning3
    • Bérénice Batut3
    • Cristóbal Gallardo3
    • Helena Rasche3
    • Saskia Hiltemann3
    • Anthony Bretaudeau2
    • Wolfgang Maier2
    • Alexandre Cormier1
    • Anika Erxleben1
    • Anne Fouilloux1
    • Anup Kumar1
    • Bazante Sanders1
    • Deepti Varshney1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Maria Doyle1
    • Mateo Boudet1
    • Matthias Bernt1
    • Matúš Kalaš1
    • Miaomiao Zhou1
    • Natalie Kucher1
    • Nicola Soranzo1
    • Paul Zierep1
    • Simon Bray1
    • Swathi Nataraj1
    • Teresa Müller1
    • William Durand1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Tools: NanoPlot

and Authors: Bérénice Batut

and Resource type: e-learning

3 e-learning materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Quality Control

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.