Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Biological sequences4
    • Sequence analysis4
    • Sequence databases4
    • Metagenomics3
    • Shotgun metagenomics3
    • Community analysis2
    • Comparative transcriptomics2
    • Environmental microbiology2
    • Function analysis2
    • Functional analysis2
    • Metatranscriptomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Protein function analysis2
    • Protein function prediction2
    • Taxonomy2
    • Transcriptome2
    • Transcriptomics2
    • Assembly1
    • Sequence assembly1
    • Show N_FILTERS more
    • Tool
    • Cutadapt
    • Galaxy46
    • FastQC13
    • SAMtools8
    • taxonomy_krona_chart7
    • MultiQC6
    • DeepTools5
    • fastp5
    • kraken25
    • BEDTools4
    • Bandage4
    • Bowtie 24
    • Falco4
    • KrakenTools4
    • MetaPhlAn4
    • NanoPlot4
    • BamTools3
    • Bracken3
    • HUMAnN23
    • JBrowse3
    • Newick Utilities3
    • QUAST3
    • STAR3
    • ggplot23
    • mothur3
    • BCFtools2
    • Bakta2
    • FASTQE2
    • FastTree2
    • Flye2
    • GraPhlAn2
    • JBrowse 22
    • MACS2
    • Minimap22
    • Recentrifuge2
    • SortMeRNA2
    • Trim Galore2
    • UCSC Genome Browser Utilities2
    • export2graphlan2
    • humann2
    • pycoQC2
    • seqtk2
    • tbl2gff32
    • ABRicate1
    • BLAST1
    • BWA1
    • Bowtie1
    • Bwa-mem21
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • FeatureCounts1
    • Filtlong1
    • FreeBayes1
    • GEMINI1
    • GOseq1
    • ISEScan1
    • Integron Finder1
    • Krona1
    • MEGAHIT1
    • MEME1
    • MLST1
    • Medaka1
    • NCBI Datasets1
    • NGSUtils1
    • Nextclade1
    • PPanGGOLiN1
    • Peakachu1
    • PlasmidFinder1
    • Polypolish1
    • R1
    • RCAS1
    • RSeQC1
    • SCANPY1
    • TRANSIT1
    • Trimmomatic1
    • UMI-tools1
    • bx-python1
    • dRep1
    • dada21
    • metaspades1
    • pangolin1
    • pathview1
    • phyloseq1
    • pyGenomeTracks1
    • scikit-learn1
    • shovill1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training7
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • Microbiome2
    • Sequence analysis2
    • Transcriptomics2
    • metatranscriptomics2
    • Assembly1
    • QC1
    • assembly1
    • bulk1
    • collections1
    • cyoa1
    • drosophila1
    • metagenomics1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner7
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International7
    • Show N_FILTERS more
    • Target audience
    • Students7
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Maria Doyle5
    • Saskia Hiltemann4
    • Pratik Jagtap3
    • Subina Mehta3
    • Alexandre Cormier2
    • Anthony Bretaudeau2
    • Emma Leith2
    • Erwan Corre2
    • Laura Leroi2
    • Praveen Kumar2
    • Ray Sajulga2
    • Stéphanie Robin2
    • Alex Ostrovsky1
    • Anika Erxleben1
    • Anna Syme1
    • Anton Nekrutenko1
    • Belinda Phipson1
    • Brandon Pickett1
    • Cameron Hyde1
    • Clemens Blank1
    • Cristóbal Gallardo1
    • Daniel Maticzka1
    • Delphine Lariviere1
    • Engy Nasr1
    • Florian Heyl1
    • Giulio Formenti1
    • Harriet Dashnow1
    • Helena Rasche1
    • Iacopo Cristoferi1
    • Kenji Fujihara1
    • Linelle Abueg1
    • Lucille Delisle1
    • Mallory Freeberg1
    • Marcella Sozzoni1
    • Marek Ostaszewski1
    • Matti Hoch1
    • Mo Heydarian1
    • Myrthe van Baardwijk1
    • Najat Amoukou1
    • Nicola Soranzo1
    • Paul Zierep1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Polina Polunina1
    • Sylvia Mahara1
    • Twishi Gulati1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut7
    • Helena Rasche7
    • Saskia Hiltemann7
    • Björn Grüning4
    • Nicola Soranzo4
    • Cristóbal Gallardo3
    • Niall Beard3
    • William Durand3
    • Alexandre Cormier2
    • Anika Erxleben2
    • Anthony Bretaudeau2
    • Lucille Delisle2
    • Maria Doyle2
    • Mateo Boudet2
    • Paul Zierep2
    • Simon Bray2
    • Swathi Nataraj2
    • Wolfgang Maier2
    • Amirhossein Naghsh Nilchi1
    • Anne Fouilloux1
    • Anup Kumar1
    • Armin Dadras1
    • Clea Siguret1
    • Clemens Blank1
    • Ekaterina Polkh1
    • Engy Nasr1
    • Florian Heyl1
    • Gildas Le Corguillé1
    • Graeme Tyson1
    • Hans-Rudolf Hotz1
    • Marius van den Beek1
    • Martin Čech1
    • Matthias Bernt1
    • Mehmet Tekman1
    • Natalie Kucher1
    • Pavankumar Videm1
    • Polina Polunina1
    • Teresa Müller1
    • Show N_FILTERS more
    • Resource type
    • e-learning6
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets7
    • Associated Workflows7
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Cutadapt

and Authors: Bérénice Batut

7 materials found
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Assembly of metagenomic sequencing data

    • beginner
    Sequence assembly Metagenomics Assembly assembly metagenomics microgalaxy
  • e-learning

    CLIP-Seq data analysis from pre-processing to motif detection

    • beginner
    Transcriptomics
  • e-learning

    Quality Control

    • beginner
    Sequence analysis
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
  • slides

    Quality Control

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.