Materials - TeSS Sandbox (Training eSupport System)

Training materials

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Authors: Wendi Bacon

and Contributors: Pavankumar Videm

11 materials found

e-learning

Converting between common single cell data formats

• beginner
Single Cell data import data management
e-learning

Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

• beginner
Single Cell data management transcriptomics
e-learning

Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

• beginner
Single Cell data management
e-learning

Importing files from public atlases

• beginner
Single Cell data import data management
e-learning

Inferring single cell trajectories with Scanpy

• beginner
MIGHTS Single Cell paper-replication
e-learning

Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)

• beginner
MIGHTS Single Cell jupyter-notebook paper-replication
e-learning

Generating a single cell matrix using Alevin and combining datasets (bash + R)

• beginner
10x MIGHTS Single Cell jupyter-notebook paper-replication
e-learning

Generating a single cell matrix using Alevin

• beginner
MIGHTS Single Cell paper-replication
e-learning

Combining single cell datasets after pre-processing

• beginner
MIGHTS Single Cell paper-replication
e-learning

Filter, plot and explore single-cell RNA-seq data with Scanpy

• beginner
MIGHTS Single Cell paper-replication

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