Training materials
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e-learning
Pseudobulk Analysis with Decoupler and EdgeR
• beginnerSingle Cell pseudobulk transcriptomics -
e-learning
Evaluating Reference Data for Bulk RNA Deconvolution
• beginnerSingle Cell transcriptomics -
e-learning
Clustering 3K PBMCs with Seurat
• beginner10x Single Cell -
e-learning
GO Enrichment Analysis on Single-Cell RNA-Seq Data
• beginnerGO enrichment Single Cell single cell -
slides
Single-cell Formats and Resources
• beginnerSingle Cell -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Importing files from public atlases
• beginnerSingle Cell data import data management -
e-learning
Inferring single cell trajectories with Scanpy
• beginnerMIGHTS Single Cell paper-replication