Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Exomes31
    • Genome annotation31
    • Genomes31
    • Genomics31
    • Personal genomics31
    • Synthetic genomics31
    • Viral genomics31
    • Whole genomes31
    • Bottom-up proteomics29
    • Discovery proteomics29
    • MS-based targeted proteomics29
    • MS-based untargeted proteomics29
    • Metaproteomics29
    • Peptide identification29
    • Protein and peptide identification29
    • Proteomics29
    • Quantitative proteomics29
    • Targeted proteomics29
    • Top-down proteomics29
    • Bayesian methods22
    • Biostatistics22
    • Descriptive statistics22
    • Gaussian processes22
    • Inferential statistics22
    • Markov processes22
    • Multivariate statistics22
    • Probabilistic graphical model22
    • Probability22
    • Statistics22
    • Statistics and probability22
    • Assembly21
    • Biological sequences21
    • Sequence analysis21
    • Sequence assembly21
    • Sequence databases21
    • Antimicrobial stewardship17
    • Comparative transcriptomics17
    • Medical microbiology17
    • Microbial genetics17
    • Microbial physiology17
    • Microbial surveillance17
    • Microbiological surveillance17
    • Microbiology17
    • Molecular infection biology17
    • Molecular microbiology17
    • Transcriptome17
    • Transcriptomics17
    • Community analysis14
    • Computational ecology14
    • DNA variation14
    • Ecoinformatics14
    • Ecological informatics14
    • Ecology14
    • Ecosystem science14
    • Environmental microbiology14
    • Genetic variation14
    • Genomic variation14
    • Microbial ecology14
    • Microbiome14
    • Molecular community analysis14
    • Mutation14
    • Polymorphism14
    • Somatic mutations14
    • Metagenomics13
    • Shotgun metagenomics13
    • Biodiversity10
    • Epigenomics10
    • Diffraction experiment9
    • Imaging9
    • Microscopy9
    • Microscopy imaging9
    • Optical super resolution microscopy9
    • Photonic force microscopy9
    • Photonic microscopy9
    • Taxonomy9
    • Epidemiology6
    • Exometabolomics6
    • LC-MS-based metabolomics6
    • MS-based metabolomics6
    • MS-based targeted metabolomics6
    • MS-based untargeted metabolomics6
    • Mass spectrometry-based metabolomics6
    • Metabolites6
    • Metabolome6
    • Metabolomics6
    • Metabonomics6
    • NMR-based metabolomics6
    • Public health6
    • Public health and epidemiology6
    • Communicable disease5
    • Computational chemistry5
    • De novo genome sequencing5
    • Genome sequencing5
    • Infectious disease5
    • Transmissible disease5
    • WGS5
    • Whole genome resequencing5
    • Whole genome sequencing5
    • Gene and protein families4
    • Gene families4
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • FastQC27
    • SAMtools23
    • MultiQC19
    • BWA16
    • BEDTools14
    • Cutadapt12
    • JBrowse12
    • SCANPY12
    • fastp12
    • DeepTools11
    • scikit-learn10
    • Falco9
    • STAR9
    • QUAST8
    • ggplot28
    • BCFtools7
    • BUSCO7
    • BamTools7
    • FreeBayes7
    • NanoPlot7
    • Trimmomatic7
    • taxonomy_krona_chart7
    • Bowtie 26
    • GEMINI6
    • Galaxy Image Analysis6
    • MaxQuant6
    • msConvert6
    • scikit-image6
    • Bandage5
    • Galactic Circos5
    • HISAT25
    • RSeQC5
    • Trim Galore5
    • gffread5
    • kraken25
    • BLAST4
    • Bwa-mem24
    • Flye4
    • MACS4
    • MSstats4
    • MetaPhlAn4
    • Minimap24
    • SRA Software Toolkit4
    • UniProt4
    • Workflow4Metabolomics4
    • anndata4
    • pyGenomeTracks4
    • seqtk4
    • xcms4
    • Biopython3
    • Cardinal3
    • Diamond3
    • DropletUtils3
    • FASTX-Toolkit3
    • GOseq3
    • GraPhlAn3
    • InterProScan (EBI)3
    • Merqury3
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3
    • Open Babel3
    • Salmon3
    • SortMeRNA3
    • Stacks3
    • StringTie3
    • The Protein Data Bank (PDB)3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • annotatemyids3
    • export2graphlan3
    • gfastats3
    • gffcompare3
    • humann3
    • lofreq3
    • snippy3
    • snpEff3
    • Apollo2
    • Bakta2
    • Bio3D2
    • COMBAT-TB Workbench2
    • CellProfiler2
    • ChIPpeakAnno2
    • Circos2
    • Combine Metaphlan and HUMAnN2
    • DESeq22
    • European Nucleotide Archive (ENA)2
    • FASTQE2
    • FeatureCounts2
    • GOEnrichment2
    • GenomeScope 2.02
    • Gromacs2
    • HUMAnN22
    • Helixer2
    • IsoformSwitchAnalyzeR2
    • JBrowse 22
    • KrakenTools2
    • MDAnalysis2
    • MEME2
    • Newick Utilities2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training241
    • Show N_FILTERS more
    • Keyword
    • Proteomics29
    • biodiversity29
    • Single Cell27
    • microgalaxy27
    • Statistics and machine learning21
    • Transcriptomics17
    • Assembly15
    • Genome Annotation15
    • Ecology14
    • Variant Analysis14
    • jbrowse114
    • Using Galaxy and Managing your Data12
    • Microbiome11
    • gmod11
    • interactive-tools11
    • Epigenetics10
    • Imaging9
    • Introduction to Galaxy Analyses9
    • earth-system9
    • eukaryote9
    • prokaryote9
    • Climate8
    • one-health8
    • DDA7
    • assembly7
    • covid197
    • ocean7
    • paper-replication7
    • MIGHTS6
    • Metabolomics6
    • Sequence analysis6
    • cyoa6
    • plants6
    • 10x5
    • Computational chemistry5
    • EBV dataset5
    • EBV workflow5
    • Visualisation5
    • label-TMT115
    • transcriptomics5
    • work-in-progress5
    • workflows5
    • DIA4
    • HeLa4
    • QC4
    • illumina4
    • mouse4
    • nanopore4
    • ChIP-seq3
    • FAIR3
    • Genetic composition EBV class3
    • RAD-seq3
    • amr3
    • bacteria3
    • bioimaging3
    • collections3
    • data import3
    • data management3
    • pacbio3
    • proteogenomics3
    • virology3
    • 16S2
    • Contributing to the Galaxy Training Material2
    • Data Paper2
    • Digital Humanities2
    • EML2
    • Evolution2
    • Metadata2
    • Species population EBV class2
    • Species populations EBV class2
    • VGP2
    • apollo22
    • bulk2
    • deep-learning2
    • epigenetics2
    • essential genes2
    • eukaryota2
    • human2
    • jupyter-lab2
    • label-free2
    • machine-learning2
    • maker2
    • marine omics2
    • metabarcoding2
    • metagenomics2
    • metatranscriptomics2
    • modeling2
    • netcdf data2
    • rna-seq2
    • text mining2
    • AI1
    • Biodiversity1
    • Braker31
    • CRISPR1
    • Community composition EBV class1
    • EBV workflowz1
    • GIS1
    • GO enrichment1
    • Galaxy Server administration1
    • Geographical Information System1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner183
    • Intermediate52
    • Advanced6
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International241
    • Show N_FILTERS more
    • Target audience
    • Students238
    • Instructors2
    • Galaxy Administrators1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut34
    • Saskia Hiltemann20
    • Helena Rasche17
    • Subina Mehta16
    • Björn Grüning14
    • Anthony Bretaudeau13
    • Anton Nekrutenko11
    • Anup Kumar11
    • Cristóbal Gallardo11
    • Pratik Jagtap11
    • Yvan Le Bras11
    • Delphine Lariviere10
    • Maria Doyle10
    • Mehmet Tekman10
    • Melanie Föll10
    • Wolfgang Maier10
    • Pavankumar Videm9
    • Anne Fouilloux8
    • Marie Josse8
    • Simon Bray8
    • Timothy J. Griffin8
    • Wendi Bacon8
    • Daniel Blankenberg7
    • Matthias Fahrner7
    • Nicola Soranzo7
    • Praveen Kumar7
    • Simon Gladman7
    • Anika Erxleben6
    • Emma Leith6
    • Erwan Corre6
    • Stéphanie Robin6
    • Alex Ostrovsky5
    • Alexandre Cormier5
    • Anna Syme5
    • Dave Clements5
    • Dechen Bhuming5
    • Florian Christoph Sigloch5
    • James Johnson5
    • Joachim Wolff5
    • Julia Jakiela5
    • Katherine Do5
    • Laura Leroi5
    • Leonid Kostrykin5
    • Ray Sajulga5
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Beatriz Serrano-Solano4
    • Clemens Blank4
    • Diana Chiang Jurado4
    • Lucille Delisle4
    • Mallory Freeberg4
    • Marius van den Beek4
    • Nadia Goué4
    • Vivek Bhardwaj4
    • Bazante Sanders3
    • Belinda Phipson3
    • Christopher Barnett3
    • Engy Nasr3
    • Fidel Ramirez3
    • Florian Heyl3
    • Fotis E. Psomopoulos3
    • Gildas Le Corguillé3
    • Jean-François Martin3
    • Katarzyna Kamieniecka3
    • Khaled Jum'ah3
    • Krzysztof Poterlowicz3
    • Marie Crane3
    • Marisa Loach3
    • Mo Heydarian3
    • Morgan Howells3
    • Mélanie Petera3
    • Paul Zierep3
    • Riccardo Massei3
    • Anne Pajon2
    • Brandon Pickett2
    • Christoph Stritt2
    • Clea Siguret2
    • Coline Royaux2
    • Daniela Brites2
    • Daniela Schneider2
    • Ekaterina Polkh2
    • Fabio Cumbo2
    • Friederike Dündar2
    • Galo A. Goig2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Jayadev Joshi2
    • Kaivan Kamali2
    • Leily Rabbani2
    • Linelle Abueg2
    • Miguel Roncoroni2
    • Pauline Seguineau2
    • Peter van Heusden2
    • Polina Polunina2
    • Romane LIBOUBAN2
    • Tharindu Senapathi2
    • Thomas Wollmann2
    • Toby Hodges2
    • Torsten Seemann2
    • Workflow4Metabolomics core team2
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning
    • Saskia Hiltemann294
    • Helena Rasche249
    • Bérénice Batut132
    • Nicola Soranzo67
    • Anthony Bretaudeau56
    • Cristóbal Gallardo55
    • Martin Čech47
    • Niall Beard42
    • Teresa Müller37
    • Armin Dadras36
    • Gildas Le Corguillé33
    • Wolfgang Maier33
    • Mehmet Tekman32
    • Pavankumar Videm32
    • Wendi Bacon32
    • Yvan Le Bras31
    • Melanie Föll30
    • William Durand29
    • Subina Mehta28
    • Nate Coraor22
    • Simon Bray22
    • Maria Doyle20
    • Beatriz Serrano-Solano19
    • Anup Kumar18
    • Anne Fouilloux15
    • Deepti Varshney15
    • Julia Jakiela14
    • Anton Nekrutenko13
    • Lucille Delisle13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Mélanie Petera11
    • Pablo Moreno11
    • Leonid Kostrykin10
    • Marius van den Beek10
    • Paul Zierep10
    • Simon Gladman10
    • Marie Josse9
    • Marisa Loach9
    • Matthias Bernt9
    • Stéphanie Robin9
    • Amirhossein Naghsh Nilchi8
    • David López8
    • Delphine Lariviere8
    • Peter van Heusden8
    • Verena Moosmann8
    • Kaivan Kamali7
    • Katherine Do7
    • Alexandre Cormier6
    • Anna Syme6
    • Daniela Schneider6
    • Diana Chiang Jurado6
    • Florian Heyl6
    • Hans-Rudolf Hotz6
    • Linelle Abueg6
    • Mallory Freeberg6
    • Morgan Howells6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Clea Siguret5
    • Clemens Blank5
    • Christopher Barnett4
    • Coline Royaux4
    • Dave Clements4
    • Florian Christoph Sigloch4
    • Bazante Sanders3
    • Donny Vrins3
    • Ekaterina Polkh3
    • Engy Nasr3
    • Fabio Cumbo3
    • Jasper Ouwerkerk3
    • Joachim Wolff3
    • Katarzyna Kamieniecka3
    • Khaled Jum'ah3
    • Mateo Boudet3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Riccardo Massei3
    • Timon Schlegel3
    • Alex Ostrovsky2
    • Anika Erxleben2
    • Carlos Chee Mendonça2
    • Christine Oger2
    • Christoph Stritt2
    • CicoZhang2
    • Enis Afgan2
    • Esteban Perez-Wohlfeil2
    • Fidel Ramirez2
    • Florence Combes2
    • Fotis E. Psomopoulos2
    • Graeme Tyson2
    • Helge Hecht2
    • Jayadev Joshi2
    • Jennifer Hillman-Jackson2
    • Jonathan Kreplak2
    • Jonathan Manning2
    • Kristina Gomoryova2
    • Laura Leroi2
    • Leily Rabbani2
    • Show N_FILTERS more
    • Resource type
    • e-learning224
    • slides17
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows209
    • Associated Training Datasets203
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Björn Grüning

and Tools: Galaxy

241 materials found
  • e-learning

    Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)

    •• intermediate
    Metabolomics
  • e-learning

    Mass spectrometry: LC-MS preprocessing with XCMS

    •• intermediate
    Metabolomics
  • e-learning

    Mass spectrometry imaging: Examining the spatial distribution of analytes

    • beginner
    Metabolomics
  • e-learning

    Mass spectrometry imaging: Finding differential analytes

    •• intermediate
    Metabolomics
  • e-learning

    Finding the muon stopping site with pymuon-suite in Galaxy

    • beginner
    Materials Science
  • e-learning

    Galaxy Basics for everyone

    • beginner
    Introduction to Galaxy Analyses
  • e-learning

    Quality Control

    • beginner
    Sequence analysis
  • e-learning

    Mapping

    • beginner
    Sequence analysis Mapping
  • slides

    Quality Control

    • beginner
    Sequence analysis
  • slides

    Mapping

    • beginner
    Sequence analysis
  • 1
  • 2
  • …
  • 17
  • 18
  • 19
  • 20
  • 21
  • 22
  • 23
  • 24
  • 25
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.