Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Community analysis3
    • Environmental microbiology3
    • Microbial ecology3
    • Microbiome3
    • Molecular community analysis3
    • Antimicrobial stewardship2
    • Biological sequences2
    • De novo genome sequencing2
    • Exomes2
    • Genome annotation2
    • Genome sequencing2
    • Genomes2
    • Genomics2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Sequence analysis2
    • Sequence databases2
    • Synthetic genomics2
    • Viral genomics2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Whole genomes2
    • Comparative transcriptomics1
    • Computational ecology1
    • DNA metabarcoding1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Metabarcoding1
    • Metagenomics1
    • RNA metabarcoding1
    • Shotgun metagenomics1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy4
    • Bracken2
    • Falco2
    • Recentrifuge2
    • kraken22
    • Cutadapt1
    • DESeq21
    • FeatureCounts1
    • GOseq1
    • MultiQC1
    • R1
    • RSeQC1
    • SAMtools1
    • STAR1
    • dada21
    • fastp1
    • ggplot21
    • pathview1
    • phyloseq1
    • pyGenomeTracks1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • bacteria2
    • illumina2
    • 16S1
    • Ecology1
    • Microbiome1
    • QC1
    • Sequence analysis1
    • Transcriptomics1
    • bulk1
    • collections1
    • cyoa1
    • drosophila1
    • metabarcoding1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut4
    • Anika Erxleben1
    • Clea Siguret1
    • Clemens Blank1
    • Lucille Delisle1
    • Mallory Freeberg1
    • Maria Doyle1
    • Mo Heydarian1
    • Nicola Soranzo1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Show N_FILTERS more
    • Contributor
    • Clea Siguret
    • Saskia Hiltemann192
    • Helena Rasche176
    • Björn Grüning152
    • Bérénice Batut96
    • Nicola Soranzo55
    • Cristóbal Gallardo43
    • Niall Beard36
    • Mehmet Tekman30
    • Anthony Bretaudeau29
    • Wendi Bacon29
    • Martin Čech28
    • Gildas Le Corguillé27
    • Teresa Müller27
    • Pavankumar Videm26
    • William Durand25
    • Armin Dadras24
    • Wolfgang Maier21
    • Yvan Le Bras21
    • Maria Doyle19
    • Anup Kumar16
    • Beatriz Serrano-Solano15
    • Subina Mehta14
    • Julia Jakiela13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Anne Fouilloux11
    • Deepti Varshney11
    • Melanie Föll11
    • Nate Coraor11
    • Simon Bray11
    • Pablo Moreno10
    • Paul Zierep9
    • Lucille Delisle8
    • Marisa Loach8
    • Matthias Bernt8
    • Anton Nekrutenko7
    • David López7
    • Kaivan Kamali7
    • Leonid Kostrykin7
    • Simon Gladman7
    • Verena Moosmann7
    • Hans-Rudolf Hotz6
    • Morgan Howells6
    • Mélanie Petera6
    • Alireza Khanteymoori5
    • Marie Josse5
    • Alexandre Cormier4
    • Anna Syme4
    • Bert Droesbeke4
    • Delphine Lariviere4
    • Florian Heyl4
    • Marius van den Beek4
    • Stéphanie Robin4
    • Amirhossein Naghsh Nilchi3
    • Bazante Sanders3
    • Clemens Blank3
    • Coline Royaux3
    • Dave Clements3
    • Diana Chiang Jurado3
    • Ekaterina Polkh3
    • Engy Nasr3
    • Joachim Wolff3
    • Katarzyna Kamieniecka3
    • Khaled Jum'ah3
    • Mallory Freeberg3
    • Mateo Boudet3
    • Miaomiao Zhou3
    • Peter van Heusden3
    • Alex Ostrovsky2
    • Anika Erxleben2
    • Carlos Chee Mendonça2
    • Christine Oger2
    • CicoZhang2
    • Donny Vrins2
    • Enis Afgan2
    • Esteban Perez-Wohlfeil2
    • Fabio Cumbo2
    • Fidel Ramirez2
    • Florence Combes2
    • Graeme Tyson2
    • Jennifer Hillman-Jackson2
    • Jonathan Manning2
    • Kenza Bazi-Kabbaj2
    • Leily Rabbani2
    • Riccardo Massei2
    • Swathi Nataraj2
    • Vijay2
    • Willem de Koning2
    • kpbioteam2
    • pimarin2
    • qiagu2
    • Ahmed Hamid Awan1
    • Ankerl Yassine1
    • Bethan Manley1
    • Cameron Watson1
    • Camila Goclowski1
    • Christoph Stritt1
    • Cyril Monjeaud1
    • Daniel Sobral1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows
    • Associated Training Datasets4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Difficulty level: Beginner

and Contributors: Clea Siguret

and Related resources: Associated Workflows

4 materials found
  • e-learning

    Quality and contamination control in bacterial isolate using Illumina MiSeq Data

    • beginner
    Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Checking expected species and contamination in bacterial isolate

    • beginner
    Ecology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Building an amplicon sequence variant (ASV) table from 16S data using DADA2

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.