Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Community analysis3
    • Environmental microbiology3
    • Microbial ecology3
    • Microbiome3
    • Molecular community analysis3
    • Antimicrobial stewardship2
    • Biological sequences2
    • De novo genome sequencing2
    • Exomes2
    • Genome annotation2
    • Genome sequencing2
    • Genomes2
    • Genomics2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Sequence analysis2
    • Sequence databases2
    • Synthetic genomics2
    • Viral genomics2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Whole genomes2
    • Comparative transcriptomics1
    • Computational ecology1
    • DNA metabarcoding1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Metabarcoding1
    • Metagenomics1
    • RNA metabarcoding1
    • Shotgun metagenomics1
    • Taxonomy1
    • Transcriptome1
    • Transcriptomics1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy4
    • Bracken2
    • Falco2
    • Recentrifuge2
    • kraken22
    • Cutadapt1
    • DESeq21
    • FeatureCounts1
    • GOseq1
    • MultiQC1
    • R1
    • RSeQC1
    • SAMtools1
    • STAR1
    • dada21
    • fastp1
    • ggplot21
    • pathview1
    • phyloseq1
    • pyGenomeTracks1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • bacteria2
    • illumina2
    • 16S1
    • Ecology1
    • Microbiome1
    • QC1
    • Sequence analysis1
    • Transcriptomics1
    • bulk1
    • collections1
    • cyoa1
    • drosophila1
    • metabarcoding1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut4
    • Anika Erxleben1
    • Clea Siguret1
    • Clemens Blank1
    • Lucille Delisle1
    • Mallory Freeberg1
    • Maria Doyle1
    • Mo Heydarian1
    • Nicola Soranzo1
    • Pavankumar Videm1
    • Peter van Heusden1
    • Show N_FILTERS more
    • Contributor
    • Clea Siguret
    • Saskia Hiltemann309
    • Helena Rasche286
    • Björn Grüning238
    • Bérénice Batut149
    • Nicola Soranzo86
    • Anthony Bretaudeau61
    • Cristóbal Gallardo59
    • Martin Čech58
    • Niall Beard52
    • Armin Dadras37
    • Teresa Müller36
    • Gildas Le Corguillé35
    • Mehmet Tekman35
    • William Durand34
    • Nate Coraor33
    • Wendi Bacon32
    • Pavankumar Videm31
    • Melanie Föll27
    • Lucille Delisle26
    • Subina Mehta25
    • Marius van den Beek23
    • Wolfgang Maier23
    • Maria Doyle21
    • Simon Bray20
    • Simon Gladman20
    • Yvan Le Bras19
    • Anup Kumar17
    • Beatriz Serrano-Solano15
    • Deepti Varshney15
    • Khaled Jum'ah15
    • Anne Fouilloux14
    • Julia Jakiela14
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Anton Nekrutenko11
    • Matthias Bernt11
    • Mélanie Petera11
    • Katarzyna Kamieniecka9
    • Paul Zierep9
    • Pablo Moreno8
    • Stéphanie Robin8
    • David López7
    • Delphine Lariviere7
    • Kaivan Kamali7
    • Mallory Freeberg7
    • Marisa Loach7
    • Melissa Burke7
    • Verena Moosmann7
    • Alexandre Cormier6
    • Anna Syme6
    • Dave Clements6
    • Gianmauro Cuccuru6
    • Hans-Rudolf Hotz6
    • Leonid Kostrykin6
    • Mira Kuntz6
    • Morgan Howells6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Christopher Barnett5
    • Clemens Blank5
    • Ekaterina Polkh5
    • Florian Christoph Sigloch5
    • Florian Heyl5
    • Linelle Abueg5
    • Peter van Heusden5
    • Diana Chiang Jurado4
    • Alex Ostrovsky3
    • Amirhossein Naghsh Nilchi3
    • Bazante Sanders3
    • Coline Royaux3
    • Donny Vrins3
    • Engy Nasr3
    • Fabio Cumbo3
    • Joachim Wolff3
    • Krzysztof Poterlowicz3
    • Mateo Boudet3
    • Miaomiao Zhou3
    • Timon Schlegel3
    • Xavier Garnier3
    • Ahmed Hamid Awan2
    • Anika Erxleben2
    • Camila Goclowski2
    • Carlos Chee Mendonça2
    • Catherine Bromhead2
    • Christoph Stritt2
    • CicoZhang2
    • Daniela Schneider2
    • Enis Afgan2
    • Esteban Perez-Wohlfeil2
    • Fidel Ramirez2
    • Graeme Tyson2
    • Helge Hecht2
    • Jasper Ouwerkerk2
    • Jennifer Hillman-Jackson2
    • John Davis2
    • Jonathan Kreplak2
    • Jonathan Manning2
    • José Manuel Domínguez2
    • Kenza Bazi-Kabbaj2
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Hide archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Clea Siguret

and Related resources: Associated Training Datasets

and Include archived: true

4 materials found
  • e-learning

    Quality and contamination control in bacterial isolate using Illumina MiSeq Data

    • beginner
    Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Checking expected species and contamination in bacterial isolate

    • beginner
    Ecology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Building an amplicon sequence variant (ASV) table from 16S data using DADA2

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.