Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Epidemiology
    • Assembly11
    • Sequence assembly11
    • Exomes9
    • Genome annotation9
    • Genomes9
    • Genomics9
    • Personal genomics9
    • Synthetic genomics9
    • Viral genomics9
    • Whole genomes9
    • Biological sequences8
    • Sequence analysis8
    • Sequence databases8
    • Comparative transcriptomics7
    • Transcriptome7
    • Transcriptomics7
    • Community analysis5
    • Environmental microbiology5
    • Metagenomics5
    • Microbial ecology5
    • Microbiome5
    • Molecular community analysis5
    • Shotgun metagenomics5
    • Epigenomics4
    • Public health4
    • Public health and epidemiology4
    • Taxonomy4
    • Antimicrobial stewardship3
    • Biodiversity3
    • Medical microbiology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Bayesian methods2
    • Biostatistics2
    • De novo genome sequencing2
    • Descriptive statistics2
    • Exometabolomics2
    • Gaussian processes2
    • Genome sequencing2
    • Inferential statistics2
    • LC-MS-based metabolomics2
    • MS-based metabolomics2
    • MS-based targeted metabolomics2
    • MS-based untargeted metabolomics2
    • Markov processes2
    • Mass spectrometry-based metabolomics2
    • Metabolites2
    • Metabolome2
    • Metabolomics2
    • Metabonomics2
    • Multivariate statistics2
    • NMR-based metabolomics2
    • Probabilistic graphical model2
    • Probability2
    • Statistics2
    • Statistics and probability2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • 3C technologies1
    • 3C-based methods1
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Chromatin accessibility1
    • Chromatin accessibility assay1
    • Chromosome conformation analysis1
    • Chromosome conformation capture1
    • Communicable disease1
    • Computational ecology1
    • DNA metabarcoding1
    • DNA variation1
    • Data clean-up1
    • Data cleaning1
    • Data integrity1
    • Data quality1
    • Data quality management1
    • Diffraction experiment1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Extensive drug resistance (XDR)1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genetic variation1
    • Show N_FILTERS more
    • Tool
    • FastQC4
    • Galaxy4
    • fastp4
    • Bandage3
    • BCFtools2
    • Flye2
    • MultiQC2
    • NanoPlot2
    • QUAST2
    • SAMtools2
    • kraken22
    • ABRicate1
    • BEDTools1
    • BamTools1
    • Bwa-mem21
    • COMBAT-TB Workbench1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Falco1
    • FastTree1
    • Filtlong1
    • JBrowse1
    • Jvarkit1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • Newick Utilities1
    • Polypolish1
    • QualiMap1
    • ggplot21
    • shovill1
    • snippy1
    • taxonomy_krona_chart1
    • tb-profiler1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy4
    • Assembly2
    • assembly2
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Variant Analysis1
    • amr1
    • cyoa1
    • illumina1
    • nanopore1
    • one-health1
    • prokaryote1
    • tuberculosis1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Bazante Sanders2
    • Engy Nasr1
    • Paul Zierep1
    • Peter van Heusden1
    • Simon Gladman1
    • Thoba Lose1
    • Show N_FILTERS more
    • Contributor
    • Cristóbal Gallardo
    • Björn Grüning6
    • Bérénice Batut6
    • Helena Rasche6
    • Saskia Hiltemann6
    • Anthony Bretaudeau4
    • Bazante Sanders3
    • Deepti Varshney3
    • Miaomiao Zhou3
    • Wolfgang Maier3
    • pimarin2
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Matúš Kalaš1
    • Mélanie Petera1
    • Nate Coraor1
    • Paul Zierep1
    • Peter van Heusden1
    • Teresa Müller1
    • Verena Moosmann1
    • Willem de Koning1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Epidemiology

and Contributors: Cristóbal Gallardo

and Related resources: Associated Training Datasets

4 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    M. tuberculosis Variant Analysis

    •• intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.