Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly2
    • Biological sequences2
    • Community analysis2
    • Environmental microbiology2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Shotgun metagenomics2
    • Taxonomy2
    • Biodiversity1
    • DNA metabarcoding1
    • Disease1
    • Environmental metabarcoding1
    • Epidemiology1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Metabarcoding1
    • Pathology1
    • Personal genomics1
    • Public health1
    • Public health and epidemiology1
    • RNA metabarcoding1
    • Synthetic genomics1
    • Viral genomics1
    • Whole genomes1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • kraken2
    • Galaxy15
    • Bandage4
    • fastp4
    • BUSCO3
    • FastQC3
    • Flye3
    • Minimap23
    • NanoPlot3
    • BLAST2
    • Diamond2
    • GenomeScope 2.02
    • JBrowse2
    • KrakenTools2
    • Medaka2
    • MultiQC2
    • QUAST2
    • SAMtools2
    • gfastats2
    • gffread2
    • taxonomy_krona_chart2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BWA1
    • Bakta1
    • BamTools1
    • Bowtie 21
    • Bwa-mem21
    • CheckM1
    • Clair31
    • Clustal 1.8 (Clustal W, Clustal X)1
    • Clustal 2 (Clustal W, Clustal X)1
    • FEELnc1
    • Falco1
    • FastTree1
    • GECKO1
    • MEGAHIT1
    • MLST1
    • Merqury1
    • Newick Utilities1
    • OMArk1
    • Racon1
    • STAR1
    • Smudgeplots1
    • dada21
    • ggplot21
    • phyloseq1
    • pilon1
    • shovill1
    • staramr1
    • tbl2gff31
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Microbiome2
    • microgalaxy2
    • 16S1
    • Assembly1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • biodiversity1
    • cyoa1
    • metabarcoding1
    • nanopore1
    • plants1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut1
    • Cristóbal Gallardo1
    • Delphine Lariviere1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Deepti Varshney
    • Saskia Hiltemann8
    • Bérénice Batut7
    • Björn Grüning5
    • Cristóbal Gallardo5
    • Helena Rasche5
    • Teresa Müller3
    • Wolfgang Maier3
    • Clea Siguret2
    • Paul Zierep2
    • Anthony Bretaudeau1
    • Beatriz Serrano-Solano1
    • Delphine Lariviere1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Mélanie Petera1
    • Nate Coraor1
    • Nuwan Goonasekera1
    • Peter van Heusden1
    • Siyu Chen1
    • Solenne Correard1
    • Tarnima Omara1
    • Verena Moosmann1
    • Willem de Koning1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Hide disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: kraken2

and Contributors: Deepti Varshney

and Include disabled: true

3 materials found
  • e-learning

    Decontamination of a genome assembly

    • beginner
    Sequence assembly Genomics Biodiversity Assembly biodiversity
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    16S Microbial analysis with Nanopore data

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.