Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly
    • Sequence assembly3
    • Epidemiology2
    • Exomes2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Personal genomics2
    • Public health2
    • Public health and epidemiology2
    • Synthetic genomics2
    • Viral genomics2
    • Whole genomes2
    • Antimicrobial stewardship1
    • Biodiversity1
    • Biological sequences1
    • Community analysis1
    • De novo genome sequencing1
    • Disease1
    • Environmental microbiology1
    • Genome sequencing1
    • Medical microbiology1
    • Metagenomics1
    • Microbial ecology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microbiome1
    • Molecular community analysis1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Sequence analysis1
    • Sequence databases1
    • Shotgun metagenomics1
    • Taxonomy1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Show N_FILTERS more
    • Tool
    • FastQC
    • Galaxy8
    • Bandage4
    • BUSCO3
    • Flye3
    • Minimap23
    • NanoPlot3
    • fastp3
    • GenomeScope 2.02
    • Medaka2
    • MultiQC2
    • QUAST2
    • SAMtools2
    • gfastats2
    • kraken22
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BLAST1
    • BWA1
    • BamTools1
    • Bwa-mem21
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Diamond1
    • Falco1
    • FastTree1
    • JBrowse1
    • KrakenTools1
    • MEGAHIT1
    • MLST1
    • Merqury1
    • Newick Utilities1
    • OMArk1
    • Racon1
    • STAR1
    • Smudgeplots1
    • gffread1
    • ggplot21
    • pilon1
    • shovill1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Assembly2
    • assembly2
    • microgalaxy2
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • biodiversity1
    • cyoa1
    • illumina1
    • nanopore1
    • plants1
    • polishing1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Anna Syme1
    • Bazante Sanders1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Deepti Varshney
    • Bérénice Batut8
    • Helena Rasche8
    • Saskia Hiltemann8
    • Björn Grüning6
    • Cristóbal Gallardo6
    • Anthony Bretaudeau3
    • Wolfgang Maier3
    • Anna Syme2
    • Bazante Sanders2
    • Miaomiao Zhou2
    • Mélanie Petera2
    • Nate Coraor2
    • Niall Beard2
    • Nicola Soranzo2
    • William Durand2
    • Alex Ostrovsky1
    • Anton Nekrutenko1
    • Engy Nasr1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Maria Doyle1
    • Matúš Kalaš1
    • Paul Zierep1
    • Peter van Heusden1
    • Polina Polunina1
    • Simon Gladman1
    • Teresa Müller1
    • Verena Moosmann1
    • Vijay1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Assembly

and Tools: FastQC

and Contributors: Deepti Varshney

3 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    Large genome assembly and polishing

    • beginner
    Sequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.