Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Taxonomy
    • Assembly8
    • Exomes8
    • Genome annotation8
    • Genomes8
    • Genomics8
    • Personal genomics8
    • Sequence assembly8
    • Synthetic genomics8
    • Viral genomics8
    • Whole genomes8
    • Biological sequences5
    • Community analysis5
    • Environmental microbiology5
    • Metagenomics5
    • Microbial ecology5
    • Microbiome5
    • Molecular community analysis5
    • Sequence analysis5
    • Sequence databases5
    • Shotgun metagenomics5
    • Biodiversity4
    • Epidemiology3
    • Public health3
    • Public health and epidemiology3
    • Antimicrobial stewardship2
    • DNA metabarcoding2
    • De novo genome sequencing2
    • Environmental metabarcoding2
    • Genome sequencing2
    • Medical microbiology2
    • Metabarcoding2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • RNA metabarcoding2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • eDNA metabarcoding2
    • eRNA metabarcoding2
    • AMR1
    • Animal1
    • Animal biology1
    • Animal genetics1
    • Animal physiology1
    • Animals1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Botany1
    • Communicable disease1
    • Disease1
    • Entomology1
    • Extensive drug resistance (XDR)1
    • Infectious disease1
    • Metazoa1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • Plant1
    • Plant anatomy1
    • Plant biology1
    • Plant cell biology1
    • Plant ecology1
    • Plant genetics1
    • Plant physiology1
    • Plant science1
    • Plants1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • Zoology1
    • Show N_FILTERS more
    • Tool
    • Galaxy3
    • fastp2
    • kraken22
    • taxonomy_krona_chart2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • FastQC1
    • FastTree1
    • Flye1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • NanoPlot1
    • Newick Utilities1
    • SAMtools1
    • dada21
    • ggplot21
    • phyloseq1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Microbiome3
    • microgalaxy3
    • 16S2
    • metabarcoding2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • cyoa1
    • nanopore1
    • plants1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Cristóbal Gallardo1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Deepti Varshney
    • Bérénice Batut13
    • Saskia Hiltemann13
    • Helena Rasche11
    • Björn Grüning7
    • Paul Zierep5
    • Cristóbal Gallardo4
    • Engy Nasr3
    • Melanie Föll3
    • Niall Beard3
    • Nicola Soranzo3
    • Subina Mehta3
    • Mallory Freeberg2
    • Teresa Müller2
    • William Durand2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Clea Siguret1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Lucille Delisle1
    • Matthias Bernt1
    • Nate Coraor1
    • Nuwan Goonasekera1
    • Pavankumar Videm1
    • Siyu Chen1
    • Tarnima Omara1
    • Willem de Koning1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Taxonomy

and Contributors: Deepti Varshney

3 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    16S Microbial analysis with Nanopore data

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …
  • e-learning

    Building an amplicon sequence variant (ASV) table from 16S data using DADA2

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.