Materials - TeSS Sandbox (Training eSupport System)

Training materials

Register training material

Tools: Galaxy

and Contributors: Delphine Lariviere

8 materials found

e-learning

Decontamination of a genome assembly

• beginner
Sequence assembly Genomics Biodiversity Assembly biodiversity
e-learning

Essential genes detection with Transposon insertion sequencing

• beginner
Genomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq
e-learning

JupyterLab in Galaxy

• beginner
Using Galaxy and Managing your Data interactive-tools
e-learning

Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data

•• intermediate
Sequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio
e-learning

Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

•• intermediate
Sequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio
e-learning

Unicycler Assembly

• beginner
Sequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote
e-learning

Use Jupyter notebooks in Galaxy

• beginner
Using Galaxy and Managing your Data
e-learning

ERGA post-assembly QC

• beginner
Sequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants