Materials - TeSS Sandbox (Training eSupport System)

Training materials

Register training material

Scientific topics: De novo genome sequencing

and Tools: Galaxy

and Contributors: Helena Rasche

5 materials found

e-learning

Checking expected species and contamination in bacterial isolate

• beginner
Ecology Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
e-learning

Bacterial Genome Annotation

• beginner
Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod …
e-learning

Identification of AMR genes in an assembled bacterial genome

• beginner
Genomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod …
e-learning

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

• beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
e-learning

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

• beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy