Training materials
Tools: Galaxy
and Contributors: Pavankumar Videm
and Related resources: Associated Training Datasets
27 materials found
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e-learning
Pseudobulk Analysis with Decoupler and EdgeR
• beginnerSingle Cell pseudobulk transcriptomics -
e-learning
Single Cell Proteomics data analysis with bioconductor-scp
• beginnerProteomics -
e-learning
Clustering 3K PBMCs with Seurat
• beginner10x Single Cell -
e-learning
Single-cell ATAC-seq standard processing with SnapATAC2
•• intermediate10x Single Cell epigenetics single-cell -
e-learning
Genome-wide alternative splicing analysis
••• advancedTranscriptomics alternative splicing isoform switching -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Inferring single cell trajectories with Scanpy
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat
• beginnerMIGHTS Single Cell paper-replication