Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Transcriptomics
    • Exomes34
    • Genome annotation34
    • Genomes34
    • Genomics34
    • Personal genomics34
    • Synthetic genomics34
    • Viral genomics34
    • Whole genomes34
    • Bottom-up proteomics29
    • Discovery proteomics29
    • MS-based targeted proteomics29
    • MS-based untargeted proteomics29
    • Metaproteomics29
    • Peptide identification29
    • Protein and peptide identification29
    • Proteomics29
    • Quantitative proteomics29
    • Targeted proteomics29
    • Top-down proteomics29
    • Biological sequences28
    • Sequence analysis28
    • Sequence databases28
    • Computational ecology25
    • Ecoinformatics25
    • Ecological informatics25
    • Ecology25
    • Ecosystem science25
    • Assembly23
    • Sequence assembly23
    • Bayesian methods20
    • Biostatistics20
    • Comparative transcriptomics20
    • Descriptive statistics20
    • Gaussian processes20
    • Inferential statistics20
    • Markov processes20
    • Multivariate statistics20
    • Probabilistic graphical model20
    • Probability20
    • Statistics20
    • Statistics and probability20
    • Transcriptome20
    • Community analysis19
    • Environmental microbiology19
    • Microbial ecology19
    • Microbiome19
    • Molecular community analysis19
    • Metagenomics18
    • Shotgun metagenomics18
    • Antimicrobial stewardship16
    • Medical microbiology16
    • Microbial genetics16
    • Microbial physiology16
    • Microbial surveillance16
    • Microbiological surveillance16
    • Microbiology16
    • Molecular infection biology16
    • Molecular microbiology16
    • DNA variation15
    • Genetic variation15
    • Genomic variation15
    • Mutation15
    • Polymorphism15
    • Somatic mutations15
    • Taxonomy13
    • Biodiversity11
    • Epigenomics11
    • Exometabolomics10
    • LC-MS-based metabolomics10
    • MS-based metabolomics10
    • MS-based targeted metabolomics10
    • MS-based untargeted metabolomics10
    • Mass spectrometry-based metabolomics10
    • Metabolites10
    • Metabolome10
    • Metabolomics10
    • Metabonomics10
    • NMR-based metabolomics10
    • Diffraction experiment8
    • Imaging8
    • Microscopy8
    • Microscopy imaging8
    • Optical super resolution microscopy8
    • Photonic force microscopy8
    • Photonic microscopy8
    • Computational chemistry6
    • Epidemiology6
    • Public health6
    • Public health and epidemiology6
    • Algorithms5
    • Communicable disease5
    • Computer programming5
    • DNA metabarcoding5
    • Data structures5
    • De novo genome sequencing5
    • Environmental metabarcoding5
    • Genome sequencing5
    • Infectious disease5
    • Metabarcoding5
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • Cutadapt4
    • FastQC4
    • HISAT24
    • MultiQC4
    • RSeQC4
    • SAMtools4
    • BEDTools3
    • GOseq3
    • STAR3
    • ggplot23
    • DESeq22
    • DeepTools2
    • FeatureCounts2
    • Heinz2
    • R2
    • Salmon2
    • Trimmomatic2
    • annotatemyids2
    • pyGenomeTracks2
    • Biopython1
    • ChiRA1
    • Falco1
    • GOEnrichment1
    • IsoformSwitchAnalyzeR1
    • MEME1
    • Peakachu1
    • PfamScan1
    • RCAS1
    • SRA Software Toolkit1
    • StringTie1
    • Subread1
    • Targetfinder.org1
    • Trinity1
    • UMI-tools1
    • blockbuster1
    • fastp1
    • gffcompare1
    • gffread1
    • limma1
    • miRDeep21
    • pathview1
    • rnaQUAST1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training20
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics20
    • QC3
    • bulk3
    • collections3
    • mouse3
    • rna-seq3
    • cyoa2
    • interactive-tools2
    • PCA1
    • alternative splicing1
    • clustering1
    • drosophila1
    • isoform switching1
    • limma-voom1
    • metatranscriptomics1
    • miRNA1
    • network analysis1
    • plants1
    • stress tolerance1
    • viz1
    • work-in-progress1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner17
    • Intermediate2
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International20
    • Show N_FILTERS more
    • Target audience
    • Students20
    • Show N_FILTERS more
    • Author
    • Maria Doyle7
    • Pavankumar Videm4
    • Bérénice Batut3
    • Mallory Freeberg3
    • Belinda Phipson2
    • Chao Zhang2
    • Cristóbal Gallardo2
    • Harriet Dashnow2
    • Lucille Delisle2
    • Mo Heydarian2
    • Anika Erxleben1
    • Anna Trigos1
    • Anthony Bretaudeau1
    • Beatriz Serrano-Solano1
    • Casper de Visser1
    • Charity Law1
    • Charlotte Adang1
    • Clemens Blank1
    • Daniel Maticzka1
    • Erwan Corre1
    • Florian Heyl1
    • Fotis E. Psomopoulos1
    • Gildas Le Corguillé1
    • Helena Rasche1
    • IGC Bioinformatics Unit1
    • Iacopo Cristoferi1
    • Jovana Maksimovic1
    • Marek Ostaszewski1
    • Matt Ritchie1
    • Matti Hoch1
    • Myrthe van Baardwijk1
    • Nicola Soranzo1
    • Peter van Heusden1
    • Peter-Bram 't Hoen1
    • Sanne Abeln1
    • Saskia Hiltemann1
    • Shian Su1
    • Toby Hodges1
    • Xi Liu1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann
    • Helena Rasche18
    • Björn Grüning17
    • Nicola Soranzo10
    • Bérénice Batut8
    • Cristóbal Gallardo6
    • Gildas Le Corguillé6
    • Lucille Delisle5
    • Maria Doyle5
    • Niall Beard4
    • Pavankumar Videm4
    • Martin Čech3
    • William Durand3
    • Wolfgang Maier3
    • Anthony Bretaudeau2
    • Armin Dadras2
    • CicoZhang2
    • Mallory Freeberg2
    • Marius van den Beek2
    • Mehmet Tekman2
    • Amirhossein Naghsh Nilchi1
    • Anika Erxleben1
    • Anne Fouilloux1
    • Beatriz Serrano-Solano1
    • Clea Siguret1
    • Clemens Blank1
    • Ekaterina Polkh1
    • Florian Heyl1
    • Graeme Tyson1
    • Hans-Rudolf Hotz1
    • IGC Bioinformatics Unit1
    • James Taylor1
    • José Manuel Domínguez1
    • Linelle Abueg1
    • Mateusz Kuzak1
    • Matti Hoch1
    • Mira Kuntz1
    • Mo Heydarian1
    • Nate Coraor1
    • Peter-Bram 't Hoen1
    • Sanjay Kumar Srikakulam1
    • Simon Bray1
    • Teresa Müller1
    • Xavier Garnier1
    • Show N_FILTERS more
    • Resource type
    • e-learning19
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets19
    • Associated Workflows18
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Transcriptomics

and Tools: Galaxy

and Contributors: Saskia Hiltemann

20 materials found
  • e-learning

    RNA-Seq data analysis, clustering and visualisation tutorial

    • beginner
    Transcriptomics PCA bulk clustering collections mouse rna-seq work-in-progress
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Network analysis with Heinz

    • beginner
    Transcriptomics metatranscriptomics network analysis
  • e-learning

    Pathway analysis with the MINERVA Platform

    •• intermediate
    Transcriptomics bulk cyoa rna-seq viz
  • e-learning

    RNA Seq Counts to Viz in R

    • beginner
    Transcriptomics interactive-tools
  • e-learning

    Visualization of RNA-Seq results with Volcano Plot in R

    •• intermediate
    Transcriptomics interactive-tools
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    2: RNA-seq counts to genes

    • beginner
    Transcriptomics QC limma-voom mouse
  • e-learning

    GO Enrichment Analysis

    • beginner
    Transcriptomics
  • e-learning

    RNA-RNA interactome data analysis

    • beginner
    Transcriptomics
  • 1
  • 2
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.