Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Metagenomics
    • DNA variation11
    • Genetic variation11
    • Genomic variation11
    • Mutation11
    • Polymorphism11
    • Somatic mutations11
    • Antimicrobial stewardship5
    • Biological sequences5
    • Exomes5
    • Genome annotation5
    • Genomes5
    • Genomics5
    • Medical microbiology5
    • Microbial genetics5
    • Microbial physiology5
    • Microbial surveillance5
    • Microbiological surveillance5
    • Microbiology5
    • Molecular infection biology5
    • Molecular microbiology5
    • Personal genomics5
    • Sequence analysis5
    • Sequence databases5
    • Synthetic genomics5
    • Viral genomics5
    • Whole genomes5
    • Assembly4
    • Sequence assembly4
    • Communicable disease3
    • Comparative transcriptomics3
    • Computational ecology3
    • Ecoinformatics3
    • Ecological informatics3
    • Ecology3
    • Ecosystem science3
    • Epidemiology3
    • Infectious disease3
    • Public health3
    • Public health and epidemiology3
    • Transcriptome3
    • Transcriptomics3
    • Transmissible disease3
    • Community analysis2
    • De novo genome sequencing2
    • Environmental microbiology2
    • Epigenomics2
    • Evolution2
    • Evolutionary biology2
    • Genome sequencing2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Bottom-up proteomics1
    • DNA polymorphism1
    • Discovery proteomics1
    • Disease1
    • MS-based targeted proteomics1
    • MS-based untargeted proteomics1
    • Metaproteomics1
    • Microsatellites1
    • Pathology1
    • Peptide identification1
    • Phylogenetic clocks1
    • Phylogenetic dating1
    • Phylogenetic simulation1
    • Phylogenetic stratigraphy1
    • Phylogeny1
    • Phylogeny reconstruction1
    • Protein and peptide identification1
    • Proteomics1
    • Quantitative proteomics1
    • RFLP1
    • SNP1
    • Shotgun metagenomics1
    • Single nucleotide polymorphism1
    • Targeted proteomics1
    • Taxonomy1
    • Top-down proteomics1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • FastQC1
    • FastTree1
    • Flye1
    • Galaxy1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • NanoPlot1
    • Newick Utilities1
    • SAMtools1
    • fastp1
    • ggplot21
    • kraken21
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training1
    • Show N_FILTERS more
    • Keyword
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • cyoa1
    • microgalaxy1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Saskia Hiltemann19
    • Bérénice Batut18
    • Helena Rasche15
    • Björn Grüning10
    • Paul Zierep7
    • Cristóbal Gallardo6
    • Deepti Varshney5
    • Teresa Müller4
    • Engy Nasr3
    • Nicola Soranzo3
    • Subina Mehta3
    • William Durand3
    • Alex Mitchell2
    • Mallory Freeberg2
    • Melanie Föll2
    • Niall Beard2
    • Willem de Koning2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Bethan Manley1
    • Clea Siguret1
    • Erik Hjerde1
    • Espen Aberg1
    • Espen Mikal Robertsen1
    • Gildas Le Corguillé1
    • Guillermo Rangel Pineros1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Lorna Richardson1
    • Manimozhiyan Arumugam1
    • Matthias Bernt1
    • Nate Coraor1
    • Nikos Pechlivanis1
    • Nils Peder Willassen1
    • Nuwan Goonasekera1
    • Ola Tarkowska1
    • Polina Polunina1
    • Rebecca Campos1
    • Rob Finn1
    • Siyu Chen1
    • Sophia Hampe1
    • Sujai Kumar1
    • Tarnima Omara1
    • Varsha Kale1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets1
    • Associated Workflows1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Metagenomics

and Contributors: Wolfgang Maier

1 material found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.