Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly2
    • Epidemiology2
    • Public health2
    • Public health and epidemiology2
    • Sequence assembly2
    • Antimicrobial stewardship1
    • Biological sequences1
    • Community analysis1
    • De novo genome sequencing1
    • Disease1
    • Environmental microbiology1
    • Exomes1
    • Genome annotation1
    • Genome sequencing1
    • Genomes1
    • Genomics1
    • Medical microbiology1
    • Metagenomics1
    • Microbial ecology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microbiome1
    • Molecular community analysis1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Personal genomics1
    • Sequence analysis1
    • Sequence databases1
    • Shotgun metagenomics1
    • Synthetic genomics1
    • Taxonomy1
    • Viral genomics1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • Bandage
    • Galaxy32
    • SAMtools12
    • fastp10
    • BWA9
    • MultiQC9
    • Falco8
    • FastQC8
    • BCFtools7
    • Trimmomatic5
    • seqtk4
    • BEDTools3
    • BamTools3
    • Cutadapt3
    • FreeBayes3
    • GEMINI3
    • MAFFT3
    • NanoPlot3
    • QualiMap3
    • RSeQC3
    • STAR3
    • ggplot23
    • kraken23
    • pyGenomeTracks3
    • BLAST2
    • COMBAT-TB Workbench2
    • DeepTools2
    • IsoformSwitchAnalyzeR2
    • PfamScan2
    • SRA Software Toolkit2
    • Stacks2
    • StringTie2
    • Trim Galore2
    • compute_sequence_length2
    • gffcompare2
    • gffread2
    • iVar2
    • rnaQUAST2
    • snippy2
    • tb-profiler2
    • ABRicate1
    • Bowtie 21
    • Bracken1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • EGA1
    • FASTQE1
    • FASTX-Toolkit1
    • FREEC1
    • FastTree1
    • FeatureCounts1
    • Flye1
    • GOseq1
    • Galactic Circos1
    • IDR1
    • JBrowse1
    • Jvarkit1
    • KrakenTools1
    • MACS1
    • MEME1
    • MLST1
    • MSstats1
    • MaxQuant1
    • Medaka1
    • MethylDackel1
    • Minimap21
    • NCBI Resources1
    • Newick Utilities1
    • Nextclade1
    • QUAST1
    • R1
    • RAxML1
    • Recentrifuge1
    • SeqCode1
    • UCSC Genome Browser Utilities1
    • Unicycler1
    • VAPOR1
    • VarScan1
    • Vcflib1
    • iqtree1
    • lofreq1
    • pangolin1
    • pathview1
    • pycoQC1
    • shovill1
    • snpEff1
    • taxonomy_krona_chart1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training2
    • Show N_FILTERS more
    • Keyword
    • microgalaxy2
    • Assembly1
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • assembly1
    • cyoa1
    • illumina1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International2
    • Show N_FILTERS more
    • Target audience
    • Students2
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Bazante Sanders1
    • Engy Nasr1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Bérénice Batut6
    • Saskia Hiltemann6
    • Cristóbal Gallardo5
    • Helena Rasche5
    • Björn Grüning4
    • Deepti Varshney4
    • Anthony Bretaudeau2
    • Bazante Sanders2
    • Miaomiao Zhou2
    • Teresa Müller2
    • Anna Syme1
    • Delphine Lariviere1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Matúš Kalaš1
    • Nate Coraor1
    • Paul Zierep1
    • Polina Polunina1
    • Saim Momin1
    • Tom Brown1
    • Verena Moosmann1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets2
    • Associated Workflows2
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Bandage

and Contributors: Wolfgang Maier

2 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.