Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Algorithms47
    • Computer programming47
    • Data structures47
    • Programming languages47
    • Software development47
    • Software engineering47
    • Biological sequences31
    • Sequence analysis31
    • Sequence databases31
    • Exomes30
    • Genome annotation30
    • Genomes30
    • Genomics30
    • Personal genomics30
    • Synthetic genomics30
    • Viral genomics30
    • Whole genomes30
    • Computational ecology27
    • Ecoinformatics27
    • Ecological informatics27
    • Ecology27
    • Ecosystem science27
    • Bottom-up proteomics25
    • Discovery proteomics25
    • MS-based targeted proteomics25
    • MS-based untargeted proteomics25
    • Metaproteomics25
    • Peptide identification25
    • Protein and peptide identification25
    • Proteomics25
    • Quantitative proteomics25
    • Targeted proteomics25
    • Top-down proteomics25
    • Bayesian methods22
    • Biostatistics22
    • Community analysis22
    • Descriptive statistics22
    • Environmental microbiology22
    • Gaussian processes22
    • Inferential statistics22
    • Markov processes22
    • Microbial ecology22
    • Microbiome22
    • Molecular community analysis22
    • Multivariate statistics22
    • Probabilistic graphical model22
    • Probability22
    • Statistics22
    • Statistics and probability22
    • Comparative transcriptomics21
    • Transcriptome21
    • Transcriptomics21
    • Metagenomics20
    • Shotgun metagenomics20
    • Antimicrobial stewardship19
    • Medical microbiology19
    • Microbial genetics19
    • Microbial physiology19
    • Microbial surveillance19
    • Microbiological surveillance19
    • Microbiology19
    • Molecular infection biology19
    • Molecular microbiology19
    • Assembly16
    • Sequence assembly16
    • Taxonomy15
    • Diffraction experiment13
    • Imaging13
    • Microscopy13
    • Microscopy imaging13
    • Optical super resolution microscopy13
    • Photonic force microscopy13
    • Photonic microscopy13
    • DNA variation10
    • Genetic variation10
    • Genomic variation10
    • Mutation10
    • Polymorphism10
    • Somatic mutations10
    • Data management8
    • Epigenomics8
    • Metadata management8
    • Research data management (RDM)8
    • DNA metabarcoding7
    • Environmental metabarcoding7
    • Metabarcoding7
    • RNA metabarcoding7
    • eDNA metabarcoding7
    • eRNA metabarcoding7
    • Biodiversity6
    • De novo genome sequencing6
    • Genome sequencing6
    • WGS6
    • Whole genome resequencing6
    • Whole genome sequencing6
    • Epidemiology5
    • Exometabolomics5
    • LC-MS-based metabolomics5
    • MS-based metabolomics5
    • MS-based targeted metabolomics5
    • Show N_FILTERS more
    • Tool
    • Galaxy237
    • FastQC24
    • MultiQC17
    • SAMtools17
    • BEDTools13
    • BWA13
    • SCANPY13
    • fastp12
    • scikit-learn11
    • BLAST10
    • Cutadapt9
    • DeepTools9
    • Falco9
    • taxonomy_krona_chart9
    • FreeBayes8
    • scikit-image8
    • GEMINI7
    • Galaxy Image Analysis7
    • Trimmomatic7
    • ggplot27
    • kraken27
    • Bandage6
    • FASTX-Toolkit6
    • NanoPlot6
    • BamTools5
    • Biopython5
    • Bowtie 25
    • HISAT25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • QUAST5
    • STAR5
    • Diamond4
    • Flye4
    • JBrowse4
    • KrakenTools4
    • MaxQuant4
    • MetaPhlAn4
    • Minimap24
    • anndata4
    • annotatemyids4
    • bx-python4
    • mothur4
    • BCFtools3
    • Bracken3
    • Bwa-mem23
    • DESeq23
    • Data Stewardship Wizard3
    • DropletUtils3
    • GOseq3
    • MACS3
    • MAFFT3
    • MSstats3
    • Newick Utilities3
    • RStudio3
    • Salmon3
    • Stacks3
    • Trim Galore3
    • Workflow4Metabolomics3
    • msConvert3
    • seqtk3
    • snpEff3
    • BUSCO2
    • Bakta2
    • Cardinal2
    • CellProfiler2
    • CheckM2
    • Clustal 1.8 (Clustal W, Clustal X)2
    • FastTree2
    • GOEnrichment2
    • Galactic Circos2
    • GenomeScope 2.02
    • GraPhlAn2
    • HUMAnN22
    • InterProScan (EBI)2
    • MEGAHIT2
    • MEME2
    • Medaka2
    • Open Babel2
    • R2
    • RSeQC2
    • Racon2
    • Recentrifuge2
    • RepeatMasker2
    • SRA Software Toolkit2
    • SeqCode2
    • SortMeRNA2
    • StringTie2
    • UMI-tools2
    • UniProt2
    • Unicycler2
    • Unipept2
    • Vcflib2
    • bed to protein map2
    • compute_sequence_length2
    • customProDB2
    • export2graphlan2
    • gfastats2
    • gffcompare2
    • humann2
    • lofreq2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training406
    • ELIXIR Brazil4
    • Barcelona Supercomputing Center (BSC)3
    • DTLS - Dutch Techcentre For Life Sciences1
    • Test Provider1
    • VIB Bioinformatics Core1
    • Show N_FILTERS more
    • Keyword
    • Galaxy Server administration37
    • microgalaxy33
    • Single Cell32
    • biodiversity30
    • Foundations of Data Science29
    • jupyter-notebook29
    • Ecology27
    • Proteomics25
    • Contributing to the Galaxy Training Material21
    • Transcriptomics21
    • Microbiome20
    • Statistics and machine learning20
    • FAIR Data, Workflows, and Research19
    • ansible19
    • git-gat18
    • interactive-tools16
    • Development in Galaxy15
    • Genome Annotation15
    • fair15
    • Teaching and Hosting Galaxy training14
    • Using Galaxy and Managing your Data14
    • earth-system14
    • Climate13
    • Imaging13
    • paper-replication12
    • work-in-progress12
    • Assembly11
    • Introduction to Galaxy Analyses11
    • MIGHTS11
    • Variant Analysis10
    • data stewardship10
    • plants10
    • Sequence analysis9
    • data management9
    • label-free9
    • ocean9
    • prokaryote9
    • Epigenetics8
    • Galaxy Community Building8
    • cyoa8
    • gmod8
    • DDA7
    • EBV dataset7
    • EBV workflow7
    • bioimaging7
    • dmp7
    • jbrowse17
    • metagenomics7
    • assembly6
    • elixir6
    • nanopore6
    • train-the-trainers6
    • transcriptomics6
    • 10x5
    • 16S5
    • Metabolomics5
    • deploying5
    • illumina5
    • jobs5
    • label-TMT115
    • metabarcoding5
    • mouse5
    • ro-crate5
    • Community4
    • Genetic composition EBV class4
    • QC4
    • Rare Diseases & Research4
    • SIG4
    • bacteria4
    • covid194
    • diversity4
    • pangeo4
    • storage4
    • taxonomic profiling4
    • tools4
    • workflows4
    • ChIP-seq3
    • DMP3
    • DMP templates3
    • DMP tools3
    • ELIXIR-CONVERGE3
    • FAIR3
    • FAIR principles3
    • RAD-seq3
    • Synthetic Biology3
    • amr3
    • bulk3
    • collections3
    • competency3
    • data import3
    • data management plan3
    • e-learning3
    • ecology3
    • eukaryote3
    • gbif3
    • metatranscriptomics3
    • modeling3
    • monitoring3
    • one-health3
    • open3
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Not specified113
    • Intermediate104
    • Advanced28
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International409
    • Creative Commons Attribution Share Alike 4.0 International5
    • License Not Specified5
    • Creative Commons Attribution Non Commercial 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students311
    • Galaxy Administrators52
    • Instructors43
    • Patient Advocates 3
    • biologists3
    • rare disease patients representatives2
    • Life Science Researchers2
    • Researchers2
    • policy officer2
    • project manager2
    • Biomedical researchers1
    • IT support1
    • PhD students1
    • beginner1
    • data manager1
    • operational manager1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut71
    • Helena Rasche66
    • Saskia Hiltemann32
    • Björn Grüning23
    • Anton Nekrutenko21
    • Yvan Le Bras21
    • Marie Josse18
    • Wendi Bacon18
    • Subina Mehta17
    • Fotis E. Psomopoulos16
    • Katarzyna Kamieniecka16
    • Krzysztof Poterlowicz16
    • Bazante Sanders14
    • Nicola Soranzo14
    • Katherine Do13
    • Simon Gladman13
    • The Carpentries13
    • Anne Fouilloux12
    • Julia Jakiela12
    • Mehmet Tekman12
    • Donny Vrins10
    • James Johnson10
    • Khaled Jum'ah10
    • Maria Doyle10
    • Paul Zierep10
    • Pavankumar Videm10
    • Anup Kumar9
    • Nate Coraor8
    • Anika Erxleben7
    • Anthony Bretaudeau7
    • Dave Clements7
    • Delphine Lariviere7
    • Laura Cooper7
    • Marius van den Beek7
    • Robert Andrews7
    • Wolfgang Maier7
    • Allegra Via6
    • Andrew Mason6
    • Branka Franicevic6
    • Coline Royaux6
    • Cristóbal Gallardo6
    • Diana Chiang Jurado6
    • ELIXIR Goblet Train the Trainers6
    • Lucille Delisle6
    • Patricia Palagi6
    • Philippe Rocca-Serra6
    • Sara Morsy6
    • Valentin Loux6
    • Xenia Perez Sitja6
    • Anna Syme5
    • Clemens Blank5
    • Daniel Blankenberg5
    • Dechen Bhuming5
    • Joachim Wolff5
    • Kellie Snow5
    • Korneel Hens5
    • Melanie Föll5
    • Munazah Andrabi5
    • Nick Juty5
    • Saskia Lawson-Tovey5
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Beatriz Serrano-Solano4
    • Hélène Chiapello4
    • Kaivan Kamali4
    • Keiler Collier4
    • Leonid Kostrykin4
    • Mallory Freeberg4
    • Mira Kuntz4
    • Morgan Howells4
    • Pratik Jagtap4
    • Simon Bray4
    • Simone Leo4
    • Solenne Correard4
    • Vivek Bhardwaj4
    • Alex Ostrovsky3
    • Anne Pajon3
    • Avans Hogeschool3
    • Belinda Phipson3
    • Emma Leith3
    • Erwan Corre3
    • Fidel Ramirez3
    • Florian Christoph Sigloch3
    • Florian Heyl3
    • Gianmauro Cuccuru3
    • Guillaume Gricourt3
    • Hans-Rudolf Hotz3
    • Ioana Popescu3
    • Jean-Loup Faulon3
    • Joan Hérisson3
    • John Chilton3
    • John Davis3
    • Kenza Bazi-Kabbaj3
    • Laila Los3
    • Marisa Loach3
    • Matthias Bernt3
    • Mo Heydarian3
    • Nadia Tonello3
    • Polina Polunina3
    • Riccardo Massei3
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann356
    • Helena Rasche315
    • Björn Grüning262
    • Bérénice Batut155
    • Nicola Soranzo96
    • Martin Čech77
    • Anthony Bretaudeau58
    • Niall Beard58
    • Wendi Bacon57
    • Armin Dadras50
    • Nate Coraor49
    • Gildas Le Corguillé41
    • Marius van den Beek40
    • Cristóbal Gallardo39
    • Mehmet Tekman37
    • Teresa Müller37
    • Pavankumar Videm34
    • Yvan Le Bras34
    • Lucille Delisle33
    • William Durand33
    • Simon Gladman32
    • Wolfgang Maier25
    • Beatriz Serrano-Solano23
    • Maria Doyle21
    • Julia Jakiela19
    • Khaled Jum'ah17
    • Subina Mehta17
    • Anup Kumar16
    • Anne Fouilloux15
    • Deepti Varshney14
    • Donny Vrins14
    • Marie Josse14
    • Bazante Sanders13
    • Melanie Föll13
    • Pratik Jagtap13
    • Simon Bray13
    • Timothy J. Griffin13
    • Pablo Moreno12
    • Paul Zierep12
    • Matthias Bernt11
    • Peter van Heusden11
    • Anton Nekrutenko10
    • Mira Kuntz10
    • Mélanie Petera10
    • Delphine Lariviere9
    • Gianmauro Cuccuru9
    • Katarzyna Kamieniecka9
    • Leonid Kostrykin9
    • Marisa Loach9
    • David López8
    • Verena Moosmann8
    • Amirhossein Naghsh Nilchi7
    • Katherine Do7
    • Daniela Schneider6
    • Hans-Rudolf Hotz6
    • Morgan Howells6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Diana Chiang Jurado5
    • Ekaterina Polkh5
    • Florian Heyl5
    • John Davis5
    • Kaivan Kamali5
    • Anna Syme4
    • Clea Siguret4
    • Coline Royaux4
    • Eli Chadwick4
    • Enis Afgan4
    • Fotis E. Psomopoulos4
    • John Chilton4
    • Mallory Freeberg4
    • Solenne Correard4
    • Stéphanie Robin4
    • Tomas Klingström4
    • Alex Ostrovsky3
    • Clemens Blank3
    • Dave Clements3
    • Engy Nasr3
    • Keiler Collier3
    • Krzysztof Poterlowicz3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Nuwan Goonasekera3
    • Phil Reed3
    • Sofoklis Keisaris3
    • Ahmed Hamid Awan2
    • Alexandre Cormier2
    • Andrea Bagnacani2
    • Anika Erxleben2
    • Camila Goclowski2
    • Carlos Chee Mendonça2
    • Catherine Bromhead2
    • Christine Oger2
    • Dave B.2
    • Edwin den Haas2
    • Fabio Cumbo2
    • Fidel Ramirez2
    • Florence Combes2
    • Florian Christoph Sigloch2
    • Graeme Tyson2
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • slides96
    • Slidedeck29
    • Video29
    • Slides20
    • Training materials18
    • Tutorial14
    • course materials10
    • Presentation8
    • Webinar7
    • Documentation6
    • E-learning5
    • hands-on tutorial5
    • PDF4
    • Exercise3
    • Handout3
    • Scripts3
    • slideck/ presentation3
    • Computer Software2
    • FREE online course2
    • Installation instructions2
    • Jupyter notebook2
    • Manual2
    • Vignette2
    • Series of videos1
    • API reference1
    • Book1
    • Carpentries style curriculum1
    • Mock data1
    • Recorded webinar1
    • Training materials with mock data1
    • ViralZone1
    • educational materials1
    • hackathon1
    • pdf, pptx, markdown1
    • workflow1
    • youtube video1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets257
    • Associated Workflows206
    • Quarto/RMarkdown Notebook112
    • Jupyter Notebook (with Solutions)26
    • Jupyter Notebook (without Solutions)26
    • ansible19
    • git-gat18
    • jobs5
    • deploying3
    • monitoring3
    • ro-crate3
    • DMPonline2
    • cyoa2
    • networking2
    • storage2
    • training2
    • wireguard2
    • workflows2
    • Community1
    • DDA1
    • ENA1
    • FAIR1
    • SIG1
    • apollo21
    • authentication1
    • automation1
    • beacon1
    • broken1
    • cloud1
    • data1
    • fair1
    • features1
    • ga4gh1
    • gmod1
    • gtn1
    • interactive-tools1
    • systemd1
    • terraform1
    • tools1
    • work-in-progress1
    • Show N_FILTERS more
    • Node
    • Spain3
    • Belgium1
    • Netherlands1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Difficulty level: Beginner

and Resource type: e-learning

420 materials found
  • e-learning

    Adding file-sources to Galaxy

    • beginner
    Galaxy Server administration data earth-system ocean work-in-progress
  • e-learning

    Neoantigen 1a: Fusion-Database-Generation

    • beginner
    Proteomics label-free
  • e-learning

    Neoantigen 3: PepQuery2 Verification

    • beginner
    Proteomics label-free
  • e-learning

    Neoantigen 2: Non-normal-Database-Generation

    • beginner
    Proteomics label-free
  • e-learning

    Neoantigen 5b: IEDB binding PepQuery Validated Neopeptides

    • beginner
    Proteomics label-free
  • e-learning

    Neoantigen 2: Database merge and FragPipe discovery

    • beginner
    Proteomics label-free
  • e-learning

    Neoantigen 5a: Predicting HLA Binding

    • beginner
    Proteomics label-free
  • e-learning

    Neoantigen 4: Variant Annotation

    • beginner
    Proteomics label-free
  • e-learning

    Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data

    • beginner
    Metagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome
  • e-learning

    Creating community content

    • beginner
    Galaxy Community Building
  • 1
  • 2
  • 3
  • 4
  • 5
  • 6
  • 7
  • 8
  • 9
  • …
  • 41
  • 42
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.