Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Assembly2
    • Biological sequences2
    • Community analysis2
    • Environmental microbiology2
    • Exomes2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Personal genomics2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Shotgun metagenomics2
    • Synthetic genomics2
    • Viral genomics2
    • Whole genomes2
    • Antimicrobial stewardship1
    • Biodiversity1
    • Disease1
    • Epidemiology1
    • Medical microbiology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Mobile genetic elements1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Public health1
    • Public health and epidemiology1
    • Taxonomy1
    • Transposons1
    • Show N_FILTERS more
    • Tool
    • Minimap2
    • Galaxy214
    • FastQC29
    • SAMtools19
    • MultiQC17
    • scikit-learn15
    • BEDTools14
    • BWA11
    • Cutadapt11
    • DeepTools11
    • SCANPY11
    • fastp11
    • BLAST10
    • taxonomy_krona_chart9
    • FreeBayes8
    • GEMINI8
    • Falco7
    • NanoPlot7
    • STAR7
    • kraken27
    • BamTools6
    • JBrowse6
    • QUAST6
    • Trimmomatic6
    • ggplot26
    • Bandage5
    • Biopython5
    • Bowtie 25
    • HISAT25
    • MetaPhlAn5
    • FASTX-Toolkit4
    • Flye4
    • Galaxy Image Analysis4
    • HUMAnN24
    • KrakenTools4
    • MACS4
    • MaxQuant4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • Workflow4Metabolomics4
    • anndata4
    • mothur4
    • scikit-image4
    • Bracken3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • Diamond3
    • DropletUtils3
    • Galactic Circos3
    • GraPhlAn3
    • MAFFT3
    • MSstats3
    • Newick Utilities3
    • RSeQC3
    • RStudio3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • StringTie3
    • Trim Galore3
    • annotatemyids3
    • export2graphlan3
    • gffcompare3
    • humann3
    • msConvert3
    • xcms3
    • BCFtools2
    • BUSCO2
    • Bakta2
    • Bwa-mem22
    • Cardinal2
    • ChIPpeakAnno2
    • CheckM2
    • FASTQE2
    • FastTree2
    • GECKO2
    • GOEnrichment2
    • GOseq2
    • Heinz2
    • JBrowse 22
    • MAGeCK2
    • MEGAHIT2
    • MEME2
    • Medaka2
    • Racon2
    • Recentrifuge2
    • RepeatMasker2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • UniProt2
    • Unicycler2
    • Unipept2
    • Vcflib2
    • bed to protein map2
    • bx-python2
    • clusterProfiler2
    • compute_sequence_length2
    • customProDB2
    • ewastools2
    • pyGenomeTracks2
    • pycoQC2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • Microbiome2
    • Assembly1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • assembly1
    • biodiversity1
    • cyoa1
    • microgalaxy1
    • nanopore1
    • plants1
    • polishing1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Anna Syme1
    • Didier Debroas1
    • Engy Nasr1
    • Nadia Goué1
    • Paul Zierep1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut3
    • Björn Grüning2
    • Cristóbal Gallardo2
    • Deepti Varshney2
    • Helena Rasche2
    • Saskia Hiltemann2
    • Anna Syme1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Paul Zierep1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Difficulty level: Beginner

and Related resources: Associated Training Datasets

and Tools: Minimap2

3 materials found
  • e-learning

    Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data

    • beginner
    Metagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Large genome assembly and polishing

    • beginner
    Sequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.