Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Microbiome
    • Assembly8
    • Biological sequences8
    • Sequence analysis8
    • Sequence assembly8
    • Sequence databases8
    • Exomes7
    • Genome annotation7
    • Genomes7
    • Genomics7
    • Personal genomics7
    • Synthetic genomics7
    • Viral genomics7
    • Whole genomes7
    • Metagenomics6
    • Shotgun metagenomics6
    • Community analysis5
    • Comparative transcriptomics5
    • DNA variation5
    • Environmental microbiology5
    • Genetic variation5
    • Genomic variation5
    • Microbial ecology5
    • Molecular community analysis5
    • Mutation5
    • Polymorphism5
    • Somatic mutations5
    • Transcriptome5
    • Transcriptomics5
    • Antimicrobial stewardship4
    • Epidemiology4
    • Medical microbiology4
    • Microbial genetics4
    • Microbial physiology4
    • Microbial surveillance4
    • Microbiological surveillance4
    • Microbiology4
    • Molecular infection biology4
    • Molecular microbiology4
    • Public health4
    • Public health and epidemiology4
    • Taxonomy4
    • De novo genome sequencing2
    • Epigenomics2
    • Function analysis2
    • Functional analysis2
    • Genome sequencing2
    • Metatranscriptomics2
    • Protein function analysis2
    • Protein function prediction2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Biodiversity1
    • Communicable disease1
    • Computational ecology1
    • DNA polymorphism1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Extensive drug resistance (XDR)1
    • Infectious disease1
    • Microsatellites1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • RFLP1
    • SNP1
    • Single nucleotide polymorphism1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • FastQC
    • Galaxy20
    • taxonomy_krona_chart9
    • kraken26
    • MetaPhlAn5
    • HUMAnN24
    • KrakenTools4
    • MultiQC4
    • fastp4
    • Bracken3
    • Cutadapt3
    • GraPhlAn3
    • Newick Utilities3
    • SortMeRNA3
    • export2graphlan3
    • humann3
    • mothur3
    • Minimap22
    • NanoPlot2
    • Recentrifuge2
    • ggplot22
    • metaQuantome2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • BamTools1
    • Bandage1
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DISEASES1
    • EXTRACT1
    • Falco1
    • FastTree1
    • Flye1
    • Krona1
    • MEGAHIT1
    • MLST1
    • Medaka1
    • ORGANISMS1
    • Racon1
    • SAMtools1
    • Unicycler1
    • dada21
    • lotus21
    • miniasm1
    • phyloseq1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training5
    • Show N_FILTERS more
    • Keyword
    • Microbiome5
    • microgalaxy4
    • metatranscriptomics2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • beer1
    • citizen science1
    • cyoa1
    • metagenomics1
    • nanopore1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner5
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International5
    • Show N_FILTERS more
    • Target audience
    • Students5
    • Show N_FILTERS more
    • Author
    • Bérénice Batut4
    • Pratik Jagtap3
    • Saskia Hiltemann3
    • Subina Mehta3
    • Emma Leith2
    • Engy Nasr2
    • Paul Zierep2
    • Praveen Kumar2
    • Ray Sajulga2
    • Polina Polunina1
    • Siyu Chen1
    • Teresa Müller1
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche5
    • Saskia Hiltemann5
    • Bérénice Batut4
    • Cristóbal Gallardo3
    • Paul Zierep3
    • Björn Grüning2
    • Engy Nasr2
    • Deepti Varshney1
    • Hans-Rudolf Hotz1
    • Nuwan Goonasekera1
    • Siyu Chen1
    • Subina Mehta1
    • Teresa Müller1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets5
    • Associated Workflows5
    • Show N_FILTERS more
  • Hide disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Microbiome

and Tools: FastQC

and Include disabled: true

5 materials found
  • e-learning

    Identification of the micro-organisms in a beer using Nanopore sequencing

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • slides

    Introduction to metatranscriptomics

    • beginner
    Metagenomics Microbial ecology Microbiome
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.