Training materials
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Make your research FAIRer with Quarto, GitHub and Zenodo
• beginnerFAIR data management reproducible research -
e-learning
Cleaning GBIF data for the use in Ecology
• beginnerEcology data cleaning data management gbif -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management -
e-learning
Importing files from public atlases
• beginnerSingle Cell data import data management -
e-learning
FAIR Bioimage Metadata
• beginnerImaging bioimaging data management fair -
e-learning
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• beginnerImaging bioimaging data management fair -
Introduction to Containers and Snakemake for Reproducible Research
• beginnercontainer data management high-performance computing reproducibility workflows marc robinson-rechavi group training