Training materials
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e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly microgalaxy prokaryote -
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• intermediateSequence assembly Assembly covid19 -
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
e-learning
De Bruijn Graph Assembly
• beginnerSequence assembly Assembly -
e-learning
An Introduction to Genome Assembly
• beginnerSequence assembly Assembly -
slides
An introduction to get started in genome assembly and annotation
• beginnerSequence assembly Assembly -
slides
Genome assembly quality control.
• beginnerSequence assembly Assembly -
slides
Deeper look into Genome Assembly algorithms
•• intermediateSequence assembly Assembly