Training materials
Scientific topics: Microbial genetics
and Related resources: Associated Training Datasets
22 materials found
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Scientific topic
- Microbial genetics
- Exomes43
- Genome annotation43
- Genomes43
- Genomics43
- Personal genomics43
- Synthetic genomics43
- Viral genomics43
- Whole genomes43
- Bottom-up proteomics36
- Discovery proteomics36
- MS-based targeted proteomics36
- MS-based untargeted proteomics36
- Metaproteomics36
- Peptide identification36
- Protein and peptide identification36
- Proteomics36
- Quantitative proteomics36
- Targeted proteomics36
- Top-down proteomics36
- Biological sequences31
- Sequence analysis31
- Sequence databases31
- Comparative transcriptomics26
- Transcriptome26
- Transcriptomics26
- Bayesian methods24
- Biostatistics24
- Descriptive statistics24
- Gaussian processes24
- Inferential statistics24
- Markov processes24
- Multivariate statistics24
- Probabilistic graphical model24
- Probability24
- Statistics24
- Statistics and probability24
- Antimicrobial stewardship22
- Assembly22
- Medical microbiology22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- Sequence assembly22
- Community analysis20
- Environmental microbiology20
- Microbial ecology20
- Microbiome20
- Molecular community analysis20
- Metagenomics19
- Shotgun metagenomics19
- Computational ecology14
- Ecoinformatics14
- Ecological informatics14
- Ecology14
- Ecosystem science14
- Algorithms13
- Computer programming13
- Data structures13
- Programming languages13
- Software development13
- Software engineering13
- Taxonomy13
- DNA variation12
- Genetic variation12
- Genomic variation12
- Mutation12
- Polymorphism12
- Somatic mutations12
- Epigenomics11
- Diffraction experiment10
- Evolution10
- Evolutionary biology10
- Exometabolomics10
- Imaging10
- LC-MS-based metabolomics10
- MS-based metabolomics10
- MS-based targeted metabolomics10
- MS-based untargeted metabolomics10
- Mass spectrometry-based metabolomics10
- Metabolites10
- Metabolome10
- Metabolomics10
- Metabonomics10
- Microscopy10
- Microscopy imaging10
- NMR-based metabolomics10
- Optical super resolution microscopy10
- Photonic force microscopy10
- Photonic microscopy10
- Biodiversity9
- Computational chemistry7
- De novo genome sequencing6
- Epidemiology6
- Genome sequencing6
- Public health6
- Public health and epidemiology6
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Tool
- Galaxy22
- JBrowse5
- FastQC4
- fastp4
- kraken23
- snippy3
- BCFtools2
- Bakta2
- Bandage2
- Bracken2
- COMBAT-TB Workbench2
- Falco2
- NanoPlot2
- QUAST2
- Recentrifuge2
- SAMtools2
- Unicycler2
- staramr2
- tb-profiler2
- tbl2gff32
- Apollo1
- BEDTools1
- BWA1
- BamTools1
- Bowtie1
- Bowtie 21
- Bwa-mem21
- CheckM1
- Circos1
- DeepTools1
- FastTree1
- Filtlong1
- Flye1
- FreeBayes1
- Galactic Circos1
- ISEScan1
- Integron Finder1
- Jvarkit1
- Minimap21
- MultiQC1
- NCBI Datasets1
- PPanGGOLiN1
- PlasmidFinder1
- Polypolish1
- QualiMap1
- RAxML1
- Racon1
- TRANSIT1
- Trimmomatic1
- Vcflib1
- compute_sequence_length1
- dRep1
- ggplot21
- miniasm1
- shovill1
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Content provider
- Galaxy Training22
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Keyword
- microgalaxy20
- prokaryote9
- Genome Annotation8
- gmod6
- jbrowse16
- illumina5
- Assembly4
- bacteria4
- one-health4
- Evolution3
- Variant Analysis3
- amr3
- assembly3
- work-in-progress3
- Microbiome2
- biodiversity2
- nanopore2
- Ecology1
- Sequence analysis1
- apollo21
- essential genes1
- phylogenetics1
- plasmids1
- tnseq1
- tuberculosis1
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Difficulty level
- Beginner19
- Intermediate3
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Target audience
- Students22
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Author
- Bérénice Batut12
- Hélène Chiapello4
- Simon Gladman4
- Valentin Loux4
- Anton Nekrutenko3
- Bazante Sanders3
- Delphine Lariviere3
- Anna Syme2
- Christoph Stritt2
- Daniela Brites2
- Galo A. Goig2
- Helena Rasche2
- Torsten Seemann2
- Alex Ostrovsky1
- Anthony Bretaudeau1
- Clea Siguret1
- Didier Debroas1
- Guillaume Gautreau1
- Mateo Boudet1
- Nadia Goué1
- Nathan Dunn1
- Peter van Heusden1
- Saskia Hiltemann1
- Thoba Lose1
- Willem de Koning1
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Contributor
- Björn Grüning17
- Bérénice Batut16
- Helena Rasche16
- Saskia Hiltemann16
- Anthony Bretaudeau14
- Niall Beard5
- Nicola Soranzo5
- Wolfgang Maier5
- Peter van Heusden4
- Anton Nekrutenko3
- Bazante Sanders3
- Cristóbal Gallardo3
- Maria Doyle3
- Miaomiao Zhou3
- Teresa Müller3
- Christoph Stritt2
- Clea Siguret2
- Deepti Varshney2
- Delphine Lariviere2
- Gildas Le Corguillé2
- Mélanie Petera2
- Nate Coraor2
- Simon Gladman2
- Verena Moosmann2
- William Durand2
- pimarin2
- Alex Ostrovsky1
- Anna Syme1
- Enis Afgan1
- Galo A. Goig1
- Jennifer Hillman-Jackson1
- Linelle Abueg1
- Lucille Delisle1
- Matúš Kalaš1
- Paul Zierep1
- Simon Bray1
- Stéphanie Robin1
- Vijay1
- Willem de Koning1
- mmiladi1
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Resource type
- e-learning22
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Related resource
- Associated Training Datasets
- Associated Workflows18
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