Training materials
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Scientific topic
- Biological sequences1
- Comparative genomics1
- Exomes1
- Gene and protein families1
- Gene families1
- Gene family1
- Gene system1
- Genes, gene family or system1
- Genome annotation1
- Genomes1
- Genomics1
- Personal genomics1
- Phylogenetic clocks1
- Phylogenetic dating1
- Phylogenetic simulation1
- Phylogenetic stratigraphy1
- Phylogeny1
- Phylogeny reconstruction1
- Protein families1
- Protein sequence classification1
- Sequence analysis1
- Sequence databases1
- Synthetic genomics1
- Viral genomics1
- Whole genomes1
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Tool
- Galaxy266
- FastQC32
- SAMtools22
- MultiQC20
- BEDTools15
- scikit-learn15
- fastp14
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- Cutadapt13
- JBrowse13
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- taxonomy_krona_chart9
- NanoPlot8
- kraken28
- BUSCO7
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- HISAT27
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- msConvert7
- BamTools6
- Biopython6
- Workflow4Metabolomics6
- ggplot26
- BCFtools5
- Bandage5
- Bowtie 25
- Galactic Circos5
- Galaxy Image Analysis5
- MaxQuant5
- MetaPhlAn5
- RSeQC5
- StringTie5
- gffcompare5
- gffread5
- scikit-image5
- xcms5
- FASTX-Toolkit4
- Flye4
- HUMAnN24
- KrakenTools4
- MACS4
- MAFFT4
- MSstats4
- Minimap24
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
- Newick Utilities4
- Open Babel4
- anndata4
- annotatemyids4
- compute_sequence_length4
- mothur4
- Apollo3
- Bracken3
- Bwa-mem23
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- Diamond3
- DropletUtils3
- FastTree3
- GOseq3
- GraPhlAn3
- Merqury3
- RStudio3
- Salmon3
- SeqCode3
- SortMeRNA3
- Stacks3
- Trim Galore3
- UniProt3
- Unicycler3
- Unipept3
- bed to protein map3
- customProDB3
- export2graphlan3
- humann3
- pyGenomeTracks3
- seqtk3
- snippy3
- Bakta2
- Bio3D2
- COMBAT-TB Workbench2
- ChIPpeakAnno2
- CheckM2
- Circos2
- European Nucleotide Archive (ENA)2
- FASTQE2
- FeatureCounts2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- Gromacs2
- Heinz2
- InterProScan (EBI)2
- IsoformSwitchAnalyzeR2
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Content provider
- Galaxy Training2
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Difficulty level
- Beginner2
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Target audience
- Students
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Contributor
- Bérénice Batut2
- Helena Rasche2
- Saskia Hiltemann2
- Anthony Bretaudeau1
- Anton Nekrutenko1
- Armin Dadras1
- Bert Droesbeke1
- Björn Grüning1
- Clemens Blank1
- Cyril Monjeaud1
- Dave Clements1
- David López1
- Donny Vrins1
- Gildas Le Corguillé1
- Hans-Rudolf Hotz1
- Maria Doyle1
- Nate Coraor1
- Niall Beard1
- Nicola Soranzo1
- Teresa Müller1
- William Durand1
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Resource type
- e-learning2
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Related resource
- Associated Training Datasets
- Associated Workflows3
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