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    • Scientific topic
    • Transcriptomics
    • Bottom-up proteomics39
    • Discovery proteomics39
    • MS-based targeted proteomics39
    • MS-based untargeted proteomics39
    • Metaproteomics39
    • Peptide identification39
    • Protein and peptide identification39
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    • Biological sequences28
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    • Assembly21
    • Sequence assembly21
    • Computational ecology19
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    • Tool
    • Galaxy18
    • Cutadapt4
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    • BEDTools3
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    • Transcriptomics18
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    • cyoa2
    • PCA1
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    • Author
    • Maria Doyle7
    • Pavankumar Videm4
    • Belinda Phipson3
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    • Bérénice Batut2
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    • Saskia Hiltemann17
    • Björn Grüning15
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    • Bérénice Batut7
    • Gildas Le Corguillé6
    • Maria Doyle5
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    • Lucille Delisle4
    • Niall Beard4
    • Pavankumar Videm4
    • William Durand3
    • Armin Dadras2
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    • Amirhossein Naghsh Nilchi1
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    • Associated Workflows
    • Associated Training Datasets23
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Scientific topics: Transcriptomics

and Related resources: Associated Workflows

and Resource type: e-learning

18 materials found
  • e-learning

    RNA-Seq data analysis, clustering and visualisation tutorial

    • beginner
    Transcriptomics PCA bulk clustering collections mouse rna-seq work-in-progress
  • e-learning

    Genome-wide alternative splicing analysis

    ••• advanced
    Transcriptomics alternative splicing isoform switching
  • e-learning

    Network analysis with Heinz

    • beginner
    Transcriptomics metatranscriptomics network analysis
  • e-learning

    Pathway analysis with the MINERVA Platform

    •• intermediate
    Transcriptomics bulk cyoa rna-seq viz
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    2: RNA-seq counts to genes

    • beginner
    Transcriptomics QC limma-voom mouse
  • e-learning

    3: RNA-seq genes to pathways

    • beginner
    Transcriptomics mouse
  • e-learning

    GO Enrichment Analysis

    • beginner
    Transcriptomics
  • e-learning

    RNA-RNA interactome data analysis

    • beginner
    Transcriptomics
  • e-learning

    De novo transcriptome assembly, annotation, and differential expression analysis

    • beginner
    Transcriptomics
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TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.