Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Microbial physiology
    • Assembly6
    • Sequence assembly6
    • Exomes5
    • Genome annotation5
    • Genomes5
    • Genomics5
    • Personal genomics5
    • Synthetic genomics5
    • Viral genomics5
    • Whole genomes5
    • Antimicrobial stewardship4
    • Biological sequences4
    • Community analysis4
    • DNA variation4
    • Environmental microbiology4
    • Epidemiology4
    • Genetic variation4
    • Genomic variation4
    • Medical microbiology4
    • Microbial ecology4
    • Microbial genetics4
    • Microbial surveillance4
    • Microbiological surveillance4
    • Microbiology4
    • Microbiome4
    • Molecular community analysis4
    • Molecular infection biology4
    • Molecular microbiology4
    • Mutation4
    • Polymorphism4
    • Public health4
    • Public health and epidemiology4
    • Sequence analysis4
    • Sequence databases4
    • Somatic mutations4
    • De novo genome sequencing3
    • Genome sequencing3
    • Metagenomics3
    • Shotgun metagenomics3
    • Taxonomy3
    • WGS3
    • Whole genome resequencing3
    • Whole genome sequencing3
    • Comparative transcriptomics2
    • Transcriptome2
    • Transcriptomics2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Biodiversity1
    • Communicable disease1
    • Computational ecology1
    • DNA metabarcoding1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Extensive drug resistance (XDR)1
    • Infectious disease1
    • Metabarcoding1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Pathology1
    • RNA metabarcoding1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Galaxy22
    • JBrowse5
    • FastQC4
    • kraken23
    • snippy3
    • BCFtools2
    • Bakta2
    • Bandage2
    • Bracken2
    • COMBAT-TB Workbench2
    • Falco2
    • NanoPlot2
    • QUAST2
    • Recentrifuge2
    • SAMtools2
    • Unicycler2
    • staramr2
    • tb-profiler2
    • tbl2gff32
    • Apollo1
    • BEDTools1
    • BWA1
    • BamTools1
    • Bowtie1
    • Bowtie 21
    • Bwa-mem21
    • CheckM1
    • Circos1
    • DeepTools1
    • FastTree1
    • Filtlong1
    • Flye1
    • FreeBayes1
    • Galactic Circos1
    • ISEScan1
    • Integron Finder1
    • Jvarkit1
    • Minimap21
    • MultiQC1
    • NCBI Datasets1
    • PPanGGOLiN1
    • PlasmidFinder1
    • Polypolish1
    • QualiMap1
    • RAxML1
    • Racon1
    • TRANSIT1
    • Trimmomatic1
    • Vcflib1
    • compute_sequence_length1
    • dRep1
    • ggplot21
    • miniasm1
    • shovill1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training4
    • Show N_FILTERS more
    • Keyword
    • microgalaxy4
    • Assembly2
    • assembly2
    • illumina2
    • Sequence analysis1
    • Variant Analysis1
    • amr1
    • bacteria1
    • nanopore1
    • one-health1
    • prokaryote1
    • tuberculosis1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner3
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International4
    • Show N_FILTERS more
    • Target audience
    • Students4
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Bazante Sanders2
    • Clea Siguret1
    • Peter van Heusden1
    • Simon Gladman1
    • Thoba Lose1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning4
    • Bérénice Batut4
    • Saskia Hiltemann4
    • Anthony Bretaudeau3
    • Cristóbal Gallardo3
    • Helena Rasche3
    • Wolfgang Maier3
    • Bazante Sanders2
    • Miaomiao Zhou2
    • Teresa Müller2
    • Verena Moosmann2
    • Clea Siguret1
    • Deepti Varshney1
    • Linelle Abueg1
    • Matúš Kalaš1
    • Mélanie Petera1
    • Nate Coraor1
    • Peter van Heusden1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets4
    • Associated Workflows4
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Microbial physiology

and Tools: fastp

4 materials found
  • e-learning

    Quality and contamination control in bacterial isolate using Illumina MiSeq Data

    • beginner
    Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    M. tuberculosis Variant Analysis

    •• intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.