Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Sequence databases
    • Exomes11
    • Genome annotation11
    • Genomes11
    • Genomics11
    • Personal genomics11
    • Synthetic genomics11
    • Viral genomics11
    • Whole genomes11
    • Biological sequences6
    • Sequence analysis6
    • Antimicrobial stewardship5
    • Medical microbiology5
    • Microbial genetics5
    • Microbial physiology5
    • Microbial surveillance5
    • Microbiological surveillance5
    • Microbiology5
    • Molecular infection biology5
    • Molecular microbiology5
    • Gene and protein families4
    • Gene families4
    • Gene family4
    • Gene system4
    • Genes, gene family or system4
    • Protein families4
    • Protein sequence classification4
    • Animal2
    • Animal biology2
    • Animal genetics2
    • Animal physiology2
    • Animals2
    • Assembly2
    • Biodiversity2
    • Botany2
    • Communicable disease2
    • De novo genome sequencing2
    • Entomology2
    • Epidemiology2
    • Genome sequencing2
    • Infectious disease2
    • Metazoa2
    • Plant2
    • Plant anatomy2
    • Plant biology2
    • Plant cell biology2
    • Plant ecology2
    • Plant genetics2
    • Plant physiology2
    • Plant science2
    • Plants2
    • Public health2
    • Public health and epidemiology2
    • Sequence assembly2
    • Transmissible disease2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Zoology2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • DNA variation1
    • Extensive drug resistance (XDR)1
    • Functional genomics1
    • Genetic linkage1
    • Genetic variation1
    • Genomic variation1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Mobile genetic elements1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Mutation1
    • Pandrug resistance (PDR)1
    • Polymorphism1
    • Somatic mutations1
    • Synteny1
    • Total drug resistance (TDR)1
    • Transposons1
    • Show N_FILTERS more
    • Tool
    • JBrowse
    • Galaxy32
    • FastQC8
    • taxonomy_krona_chart8
    • kraken25
    • BamTools4
    • Cutadapt4
    • MetaPhlAn4
    • NanoPlot4
    • SAMtools4
    • fastp4
    • mothur4
    • BLAST3
    • BWA3
    • HUMAnN23
    • KrakenTools3
    • MAFFT3
    • MultiQC3
    • Newick Utilities3
    • Bakta2
    • Bracken2
    • Diamond2
    • FASTQE2
    • GraPhlAn2
    • Minimap22
    • SortMeRNA2
    • export2graphlan2
    • ggplot22
    • humann2
    • pycoQC2
    • seqtk2
    • staramr2
    • tbl2gff32
    • ABRicate1
    • Apollo1
    • BCFtools1
    • BEDTools1
    • Bandage1
    • BioRuby1
    • Bowtie1
    • Bowtie 21
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DeepTools1
    • FASTX-Toolkit1
    • Falco1
    • FastTree1
    • Flye1
    • FreeBayes1
    • ISEScan1
    • Integron Finder1
    • Krona1
    • MLST1
    • Medaka1
    • NCBI fcs1
    • PlasmidFinder1
    • QIIME1
    • Racon1
    • RapidNJ1
    • Recentrifuge1
    • TRANSIT1
    • Trimmomatic1
    • Unicycler1
    • Vcflib1
    • bx-python1
    • compute_sequence_length1
    • cshl_fastx_reverse_complement1
    • dada21
    • ete1
    • iqtree1
    • miniasm1
    • orfipy1
    • phyloseq1
    • snippy1
    • trimAl1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training6
    • Show N_FILTERS more
    • Keyword
    • Genome Annotation4
    • gmod4
    • jbrowse14
    • microgalaxy4
    • Sequence analysis2
    • illumina2
    • prokaryote2
    • amr1
    • apollo21
    • bacteria1
    • biodiversity1
    • one-health1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner5
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International6
    • Show N_FILTERS more
    • Target audience
    • Students6
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Helena Rasche2
    • Joachim Wolff2
    • Anna Syme1
    • Anthony Bretaudeau1
    • Bazante Sanders1
    • Cristóbal Gallardo1
    • Engy Nasr1
    • Mateo Boudet1
    • Nathan Dunn1
    • Saskia Hiltemann1
    • Simon Gladman1
    • Torsten Seemann1
    • Show N_FILTERS more
    • Contributor
    • Anthony Bretaudeau6
    • Björn Grüning6
    • Bérénice Batut6
    • Helena Rasche6
    • Saskia Hiltemann5
    • Niall Beard3
    • Nicola Soranzo3
    • Maria Doyle2
    • Teresa Müller2
    • William Durand2
    • Anna Syme1
    • Anup Kumar1
    • Bazante Sanders1
    • Cristóbal Gallardo1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Mehmet Tekman1
    • Miaomiao Zhou1
    • Paul Zierep1
    • Simon Bray1
    • Simon Gladman1
    • Stéphanie Robin1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets6
    • Associated Workflows6
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Sequence databases

and Tools: JBrowse

6 materials found
  • e-learning

    Refining Genome Annotations with Apollo (prokaryotes)

    •• intermediate
    Genomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy …
  • e-learning

    Bacterial Genome Annotation

    • beginner
    Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod …
  • e-learning

    Identification of AMR genes in an assembled bacterial genome

    • beginner
    Genomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod …
  • e-learning

    Genome annotation with Prokka

    • beginner
    Genomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    Mapping

    • beginner
    Sequence analysis Mapping
  • slides

    Mapping

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.