Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Comparative transcriptomics4
    • Transcriptome4
    • Transcriptomics4
    • Epigenomics2
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • BEDTools3
    • MACS3
    • MultiQC3
    • SAMtools3
    • SCANPY3
    • Bowtie 22
    • DeepTools2
    • Falco2
    • FastQC2
    • STAR2
    • Trim Galore2
    • BWA1
    • BamTools1
    • Biopython1
    • ChiRA1
    • Cutadapt1
    • DESeq21
    • DropletUtils1
    • FeatureCounts1
    • GOseq1
    • IDR1
    • JBrowse 21
    • MEME1
    • R1
    • RSeQC1
    • Salmon1
    • SeqCode1
    • Targetfinder.org1
    • UCSC Genome Browser Utilities1
    • blockbuster1
    • epiScanpy1
    • ggplot21
    • miRDeep21
    • pathview1
    • pyGenomeTracks1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training10
    • Show N_FILTERS more
    • Keyword
    • Single Cell4
    • Transcriptomics4
    • 10x3
    • Epigenetics2
    • plants2
    • ChIP-seq1
    • QC1
    • bulk1
    • collections1
    • cyoa1
    • drosophila1
    • epigenetics1
    • miRNA1
    • paper-replication1
    • rna-seq1
    • stress tolerance1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner10
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International10
    • Show N_FILTERS more
    • Target audience
    • Students10
    • Show N_FILTERS more
    • Author
    • Pavankumar Videm
    • Bérénice Batut46
    • Subina Mehta24
    • Saskia Hiltemann23
    • Yvan Le Bras20
    • Helena Rasche18
    • Anthony Bretaudeau16
    • Anne Fouilloux13
    • Anton Nekrutenko13
    • James Johnson13
    • Katherine Do13
    • Marie Josse13
    • Wolfgang Maier13
    • Maria Doyle12
    • Mehmet Tekman12
    • Anup Kumar11
    • Cristóbal Gallardo11
    • Pratik Jagtap11
    • Björn Grüning10
    • Delphine Lariviere10
    • Melanie Föll10
    • Wendi Bacon10
    • Simon Bray9
    • Simon Gladman8
    • Timothy J. Griffin8
    • Daniel Blankenberg7
    • Erwan Corre7
    • Julia Jakiela7
    • Kaivan Kamali7
    • Matthias Fahrner7
    • Nicola Soranzo7
    • Praveen Kumar7
    • Stéphanie Robin7
    • Alexandre Cormier6
    • Anika Erxleben6
    • Anna Syme6
    • Coline Royaux6
    • Dave Clements6
    • Emma Leith6
    • Laura Leroi6
    • Valentin Loux6
    • Alex Ostrovsky5
    • Beatriz Serrano-Solano5
    • Dechen Bhuming5
    • Florian Christoph Sigloch5
    • Fotis E. Psomopoulos5
    • Joachim Wolff5
    • Katarzyna Kamieniecka5
    • Krzysztof Poterlowicz5
    • Leonid Kostrykin5
    • Lucille Delisle5
    • Paul Zierep5
    • Ray Sajulga5
    • Alireza Khanteymoori4
    • Clemens Blank4
    • Diana Chiang Jurado4
    • Florian Heyl4
    • Helge Hecht4
    • Hélène Chiapello4
    • Khaled Jum'ah4
    • Mallory Freeberg4
    • Marius van den Beek4
    • Mélanie Petera4
    • Nadia Goué4
    • Riccardo Massei4
    • Vivek Bhardwaj4
    • Bazante Sanders3
    • Belinda Phipson3
    • Christopher Barnett3
    • Engy Nasr3
    • Fidel Ramirez3
    • Gildas Le Corguillé3
    • Jean-François Martin3
    • Marie Crane3
    • Marisa Loach3
    • Miguel Roncoroni3
    • Mo Heydarian3
    • Morgan Howells3
    • Toby Hodges3
    • Workflow4Metabolomics core team3
    • Anne Pajon2
    • Brandon Pickett2
    • Chao Zhang2
    • Christoph Stritt2
    • Clea Siguret2
    • Daniela Brites2
    • David Christiany2
    • Deepti Varshney2
    • Ekaterina Polkh2
    • Elisa Michon2
    • Esteban Perez-Wohlfeil2
    • Fabio Cumbo2
    • Florence Combes2
    • Friederike Dündar2
    • Galo A. Goig2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Jayadev Joshi2
    • Jean-Karim Hériché2
    • Jon Trow2
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning9
    • Helena Rasche9
    • Pavankumar Videm8
    • Saskia Hiltemann8
    • Cristóbal Gallardo5
    • Mehmet Tekman5
    • Bérénice Batut4
    • Wendi Bacon4
    • Hans-Rudolf Hotz3
    • Amirhossein Naghsh Nilchi2
    • Armin Dadras2
    • Beatriz Serrano-Solano2
    • Florian Heyl2
    • Lucille Delisle2
    • Marius van den Beek2
    • Martin Čech2
    • Nate Coraor2
    • Nicola Soranzo2
    • Wolfgang Maier2
    • Anika Erxleben1
    • Anthony Bretaudeau1
    • Anup Kumar1
    • Clea Siguret1
    • Clemens Blank1
    • Donny Vrins1
    • Ekaterina Polkh1
    • Gildas Le Corguillé1
    • Graeme Tyson1
    • Joachim Wolff1
    • Leily Rabbani1
    • Maria Doyle1
    • Niall Beard1
    • Simon Bray1
    • Teresa Müller1
    • Timon Schlegel1
    • William Durand1
    • Show N_FILTERS more
    • Resource type
    • e-learning10
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets10
    • Associated Workflows10
    • Show N_FILTERS more
  • Show disabled materials
  • Hide archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Galaxy

and Authors: Pavankumar Videm

and Include archived: true

10 materials found
  • e-learning

    Pre-processing of 10X Single-Cell ATAC-seq Datasets

    • beginner
    10x Single Cell epigenetics
  • e-learning

    Pre-processing of 10X Single-Cell RNA Datasets

    • beginner
    10x Single Cell
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • beginner
    Single Cell paper-replication plants
  • e-learning

    Formation of the Super-Structures on the Inactive X

    • beginner
    Epigenomics ChIP-seq Epigenetics
  • e-learning

    RNA-RNA interactome data analysis

    • beginner
    Transcriptomics
  • e-learning

    Small Non-coding RNA Clustering using BlockClust

    • beginner
    Transcriptomics
  • e-learning

    CUT&RUN data analysis

    • beginner
    Epigenomics Epigenetics
  • e-learning

    Whole transcriptome analysis of Arabidopsis thaliana

    • beginner
    Transcriptomics miRNA plants stress tolerance
  • e-learning

    Clustering 3K PBMCs with Scanpy

    • beginner
    10x Single Cell
  • e-learning

    Reference-based RNA-Seq data analysis

    • beginner
    Transcriptomics QC bulk collections cyoa drosophila rna-seq
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.