Training materials
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e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Galaxy Monitoring with Reports
• beginnerGalaxy Server administration ansible broken git-gat monitoring -
e-learning
Deploying a compute cluster in OpenStack via Terraform
• beginnerGalaxy Server administration cloud deploying terraform -
e-learning
Use Apptainer containers for running Galaxy jobs
• beginnerGalaxy Server administration ansible git-gat jobs -
e-learning
Data Libraries
• beginnerGalaxy Server administration ansible git-gat storage -
e-learning
Distributed Object Storage
• beginnerGalaxy Server administration ansible storage -
e-learning
Automation with Jenkins
• beginnerGalaxy Server administration ansible automation -
e-learning
CLI basics
• beginnerSoftware engineering Foundations of Data Science bash jupyter-notebook -
e-learning
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
e-learning
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …