Training materials
Licence: Creative Commons Attribution 4.0 International
and Scientific topics: Assembly
and Contributors: Bérénice Batut
14 materials found
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Assembly VGP eukaryote pacbio -
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Binning of metagenomic sequencing data
• beginnerMetagenomics Microbial ecology Sequence assembly Microbiome binning metagenomics microgalaxy -
e-learning
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
e-learning
Calling variants in non-diploid systems
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
e-learning
Microbial Variant Calling
• beginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy …
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