Training materials
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e-learning
Data manipulation with Pandas
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Introduction to sequencing with Python (part three)
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
SQL Educational Game - Murder Mystery
•• intermediateSoftware engineering Foundations of Data Science SQL game jupyter-notebook -
e-learning
Introduction to sequencing with Python (part four)
• beginnerSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
RStudio in Galaxy
• beginnerUsing Galaxy and Managing your Data interactive-tools -
e-learning
Masking repeats with RepeatMasker
• beginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Functional annotation of protein sequences
• beginnerGenomics Function analysis Protein sites, features and motifs Genome Annotation biodiversity eukaryote -
e-learning
Genome annotation with Maker (short)
•• intermediateGenomics Genome Annotation eukaryote gmod jbrowse1 maker -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio