Training materials
Difficulty level: Beginner
and Contributors: Helena Rasche
and Related resources: Associated Workflows
14 materials found
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e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Inferring single cell trajectories with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Generating a single cell matrix using Alevin
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Inferring single cell trajectories with Monocle3
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Identification of AMR genes in an assembled bacterial genome
• beginnerWhole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod illumina jbrowse1 microgalaxy one-health -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly gmod jbrowse1 microgalaxy nanopore -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
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