Training materials
Licence: Creative Commons Attribution 4.0 International
and Tools: SAMtools
and Contributors: Helena Rasche
25 materials found
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• beginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
e-learning
Identifying tuberculosis transmission links: from SNPs to transmission clusters
•• intermediateEvolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote -
e-learning
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)
• beginnerEpigenomics ChIP-seq Epigenetics -
e-learning
Formation of the Super-Structures on the Inactive X
• beginnerEpigenomics ChIP-seq Epigenetics -
e-learning
Identification of the binding sites of the Estrogen receptor
• beginnerEpigenomics ChIP-seq Epigenetics work-in-progress -
e-learning
Avian influenza viral strain analysis from gene segment sequencing data
•• intermediateGenetic variation Variant Analysis one-health virology -
e-learning
M. tuberculosis Variant Analysis
•• intermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote … -
e-learning
Pox virus genome analysis from tiled-amplicon sequencing data
••• advancedGenetic variation Variant Analysis one-health virology -
e-learning
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• beginnerGenetic variation Variant Analysis covid19 one-health virology